ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	142171571	cyclin-D3-2-like
nta-r.1	107782163	cyclin-D3-2
nta-r.1	107781602	cyclin-D3-3
nta-r.1	107780939	cyclin-D1-1-like
sly-u.5	101263411	cyclin-D1-1
sot-r.1	102605668	cyclin-D1-1
sot-r.1	102600091	cyclin-D4-1-like
ath-u.5	CYCD2;1	Cyclin D2;1
ath-u.5	CYCD1;1	CYCLIN D1;1
ath-u.5	CYCD3;2	CYCLIN D3;2
gma-u.5	100799683	cyclin-D4-1
gma-u.5	100795892	cyclin-D3-3
bra-r.6	103864358	cyclin-D2-1
bra-r.6	103837887	cyclin-D2-1
bra-r.6	103862565	cyclin-D5-1
vvi-u.5	100854424	cyclin-D5-1
vvi-u.5	100267897	cyclin-D3-3
ppo-u.5	7471482	cyclin-D1-1
ppo-u.5	7472682	cyclin-D3-1
mtr-u.5	25493493	cyclin-D3-2
mtr-u.5	25485430	cyclin-D3-1
ghi-r.1	107911621	cyclin-D4-2
ghi-r.1	107913282	cyclin-D5-1
ghi-r.1	107913300	cyclin-D1-1
bna-r.1	106432688	cyclin-D5-1
bna-r.1	106436714	cyclin-D3-1
cit-r.1	102621853	cyclin-D3-1
cit-r.1	102606606	cyclin-D5-1
cit-r.1	102628473	cyclin-D3-2
osa-u.5	4331985	cyclin-D5-3-like
osa-u.5	4333455	cyclin-D5-1-like
zma-u.5	100283450	cyclin delta-2
zma-u.5	100285876	cyclin delta-2
tae-r.2	123121777	cyclin-D4-1
tae-r.2	123128441	cyclin-D3-1
tae-r.2	123145564	cyclin-D3-1
hvu-r.1	123452775	cyclin-D5-2-like
hvu-r.1	123451148	cyclin-D5-1-like
hvu-r.1	123398931	cyclin-D4-1-like
sbi-r.1	8074298	cyclin-D5-2
sbi-r.1	8054229	cyclin-D5-3
sbi-r.1	8056207	cyclin-D2-1
bdi-r.1	100821457	cyclin-D5-2
bdi-r.1	100837020	cyclin-D2-2
bdi-r.1	100822201	cyclin-D2-2
cre-r.1	CHLRE_11g467772v5	uncharacterized protein
cre-r.1	CHLRE_09g414416v5	uncharacterized protein
cre-r.1	CHLRE_06g289750v5	uncharacterized protein

Top 50 coexpressed genes to 142171571 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 142171571 (nta-r.1 coexpression data)

CoexMap"142171571"

[Cytoscape]

Annotation

functional annotation

KEGG

nta04075 [list] [network] Plant hormone signal transduction (826 genes)

GO BP

GO CC

GO MF

Protein

XP_075090620.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto_nucl 4, cyto 2, cysk 1

(predict for XP_075090620.1)

Subcellular
localization
TargetP

other 6, scret 4

(predict for XP_075090620.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 142171571	nta-r.1 for 107782163	nta-r.1 for 107781602	nta-r.1 for 107780939	sly-u.5 for 101263411	sot-r.1 for 102605668	sot-r.1 for 102600091	ath-u.5 for CYCD2;1	ath-u.5 for CYCD1;1	ath-u.5 for CYCD3;2	gma-u.5 for 100799683	gma-u.5 for 100795892	bra-r.6 for 103864358	bra-r.6 for 103837887	bra-r.6 for 103862565	vvi-u.5 for 100854424	vvi-u.5 for 100267897	ppo-u.5 for 7471482	ppo-u.5 for 7472682	mtr-u.5 for 25493493	mtr-u.5 for 25485430	ghi-r.1 for 107911621	ghi-r.1 for 107913282	ghi-r.1 for 107913300	bna-r.1 for 106432688	bna-r.1 for 106436714	cit-r.1 for 102621853	cit-r.1 for 102606606	cit-r.1 for 102628473	osa-u.5 for 4331985	osa-u.5 for 4333455	zma-u.5 for 100283450	zma-u.5 for 100285876	tae-r.2 for 123121777	tae-r.2 for 123128441	tae-r.2 for 123145564	hvu-r.1 for 123452775	hvu-r.1 for 123451148	hvu-r.1 for 123398931	sbi-r.1 for 8074298	sbi-r.1 for 8054229	sbi-r.1 for 8056207	bdi-r.1 for 100821457	bdi-r.1 for 100837020	bdi-r.1 for 100822201	cre-r.1 for CHLRE_11g467772v5	cre-r.1 for CHLRE_09g414416v5	cre-r.1 for CHLRE_06g289750v5

Ortholog

Ortholog ID: 67

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

cycD3

CYCD1;1

CYCD4;1

CYCD3;3

Function^*

cyclin-D3-2

cyclin-D4-1-like

cyclin D3.1

cyclin-D2-1

cyclin-D3-3-like

CYCLIN D1;1

CYCLIN D4;1

CYCLIN D3;3

cyclin-D5-1

cyclin-D3-3

cyclin-D3-1-like

cyclin-D2-1

cyclin-D5-1

cyclin-D3-2

cyclin-D4-2

uncharacterized LOC104878152

cyclin-D1-1

cyclin-D3-1

cyclin-D5-1

cyclin-D4-2

cyclin-D3-1

cyclin-D3-3

cyclin-D4-1-like

cyclin-D5-1

cyclin-D4-1-like

cyclin-D2-2-like

cyclin-D3-1-like

cyclin-D2-1-like

uncharacterized LOC100273934

cyclin-D4-1

cyclin-D4-2-like

cyclin-D2-2

cyclin-D2-1

cyclin-D5-1-like

cyclin-D4-1-like

cyclin-D5-3-like

cyclin-D5-2

cyclin-D3-1

cyclin-D5-3

cyclin-D4-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	5
nta04145	Phagosome	4
nta04517	IgSF CAM signaling	4
nta04814	Motor proteins	4
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	3
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta01240	Biosynthesis of cofactors	3
nta01250	Biosynthesis of nucleotide sugars	3
nta00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	6
nta00520	Amino sugar and nucleotide sugar metabolism	6
nta01240	Biosynthesis of cofactors	6
nta01250	Biosynthesis of nucleotide sugars	6
nta00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00240	Pyrimidine metabolism	2
sly01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	7
sot04075	Plant hormone signal transduction	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	6
ath03420	Nucleotide excision repair	3
ath03430	Mismatch repair	3
ath03440	Homologous recombination	3
ath03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04517	IgSF CAM signaling	2
ath04814	Motor proteins	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	2
bra00500	Starch and sucrose metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00010	Glycolysis / Gluconeogenesis	2
vvi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00944	Flavone and flavonol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	5
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	7
bna00270	Cysteine and methionine metabolism	2
bna03410	Base excision repair	2
bna03420	Nucleotide excision repair	2
bna03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01240	Biosynthesis of cofactors	2
cit01250	Biosynthesis of nucleotide sugars	2
cit00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	8
sbi03030	DNA replication	5
sbi04145	Phagosome	3
sbi03060	Protein export	3
sbi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	3

Expression

Expression pattern

Entrez Gene ID^*

107782163

107776537

107782437

543748

101248769

102583812

843357

836667

824169

100798728

100807175

100804102

103864358

103862565

103829523

100247298

104878152

100255261

7490056

18104838

11433995

25489960

107899915

107908885

107932943

106402828

106409485

106417667

102606606

102630732

102627697

4340499

4346937

100273934

103647502

103643161

123052052

123121432

123451148

123398931

123449393

8074298

8078902

100832008

100841255

5725073

5722348

5720978

The preparation time of this page was 0.2 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	3	2	3	2	2	2	3	2	3	2	2	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 142171571 (nta-r.1 coexpression data)

Top 50 enrichment test to 142171571 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**