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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18095545   30S ribosomal protein S20, chloroplastic 
 ppo-r.4   18095545   30S ribosomal protein S20, chloroplastic 
 gma-u.5   100786192   30S ribosomal protein S20, chloroplastic-like 
 gma-u.5   100499656   30S ribosomal protein S20, chloroplastic 
 mtr-u.5   11413544   30S ribosomal protein S20, chloroplastic 
 ath-u.5   PRPS20   chloroplast 30S ribosomal protein S20 
 vvi-u.5   100265925   small ribosomal subunit protein bS20c 
 sly-u.5   101261139   small ribosomal subunit protein bS20c 
 osa-u.5   ASL1   Albino Seedling Lethal1 
 zma-u.5   100286220   30S ribosomal protein S20, chloroplastic-like 

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Top 50 coexpressed genes to 18095545 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18095545 (ppo-u.5 coexpression data)

CoexMap"18095545"


ppoLOC18095545 | Entrez gene ID : 18095545    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03010 [list] [network] Ribosome (698 genes)
GO BP
GO:0006412 [list] [network] translation  (598 genes)  IEA  
GO CC
GO:0015935 [list] [network] small ribosomal subunit  (138 genes)  IEA  
GO:0005840 [list] [network] ribosome  (453 genes)  IEA  
GO MF
GO:0070181 [list] [network] small ribosomal subunit rRNA binding  (15 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (439 genes)  IEA  
Protein XP_006370215.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for XP_006370215.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_006370215.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18095545

.
ppo-r.4
for
18095545

.
gma-u.5
for
100786192

.
gma-u.5
for
100499656

.
mtr-u.5
for
11413544

.
ath-u.5
for
PRPS20

.
vvi-u.5
for
100265925

.
sly-u.5
for
101261139

.
osa-u.5
for
ASL1

.
zma-u.5
for
100286220

.


Ortholog ID: 5993
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PRPS20 LOC100786192 LOC100499656 LOC101261139 ASL1 LOC100286220 LOC103841657 LOC103859614 LOC100265925 LOC18095545 LOC11413544 LOC123078986 LOC123070582 LOC123444104 LOC107944081 LOC107948757 LOC125603865 LOC106405949 CHLRE_12g494750v5 LOC8068015 LOC102597213 LOC102616817 LOC100837078 LOC107812357 LOC107776799
Function* chloroplast 30S ribosomal protein S20 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic small ribosomal subunit protein bS20c Albino Seedling Lethal1 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic small ribosomal subunit protein bS20c 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic-like uncharacterized protein 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic small ribosomal subunit protein bS20c small ribosomal subunit protein bS20c-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 13
ath01240 Biosynthesis of cofactors 2
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
cit00195 Photosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820750 100786192 100499656 101261139 4325273 100286220 103841657 103859614 100265925 18095545 11413544 123078986 123070582 123444104 107944081 107948757 125603865 106405949 5726079 8068015 102597213 102616817 100837078 107812357 107776799
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