ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	18095562	squamosa promoter-binding-like protein 4
ppo-r.4	18095562	squamosa promoter-binding-like protein 4
ppo-u.5	7469559	squamosa promoter-binding protein 1
gma-u.5	100800646	squamosa promoter-binding protein 1
gma-u.5	100802206	squamosa promoter-binding-like protein 8
gma-u.5	100805328	squamosa promoter-binding-like protein 13A
mtr-u.5	25493121	squamosa promoter-binding-like protein 3
mtr-u.5	25502014	squamosa promoter-binding-like protein 13A
mtr-u.5	25502503	squamosa promoter-binding protein 1
ath-u.5	SPL13B	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
ath-u.5	AT1G69170	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
ath-u.5	SPL4	squamosa promoter binding protein-like 4
vvi-u.5	100261045	squamosa promoter-binding-like protein 13A
vvi-u.5	100253723	promoter-binding protein SPL9
vvi-u.5	100266738	squamosa promoter-binding-like protein 8
sly-u.5	SBP3	squamosa promoter binding-like protein 3
sly-u.5	101250753	squamosa promoter-binding-like protein 9
sly-u.5	101251286	teosinte glume architecture 1
osa-u.5	107276066	squamosa promoter-binding-like protein 11
osa-u.5	4347516	squamosa promoter-binding-like protein 18
osa-u.5	4346133	squamosa promoter-binding-like protein 16
zma-u.5	sbp29	SBP-transcription factor 29
zma-u.5	sbp21	SBP-transcription factor 21
zma-u.5	sbp5	SBP-transcription factor 5

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(2205 genes)

IEA

Protein

XP_006370233.2 [sequence] [blastp]

Subcellular
localization
wolf

extr 4, vacu 3, golg 1, E.R._vacu 1

(predict for XP_006370233.2)

Subcellular
localization
TargetP

scret 5

(predict for XP_006370233.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18095562	ppo-r.4 for 18095562	ppo-u.5 for 7469559	gma-u.5 for 100800646	gma-u.5 for 100802206	gma-u.5 for 100805328	mtr-u.5 for 25493121	mtr-u.5 for 25502014	mtr-u.5 for 25502503	ath-u.5 for SPL13B	ath-u.5 for AT1G69170	ath-u.5 for SPL4	vvi-u.5 for 100261045	vvi-u.5 for 100253723	vvi-u.5 for 100266738	sly-u.5 for SBP3	sly-u.5 for 101250753	sly-u.5 for 101251286	osa-u.5 for 107276066	osa-u.5 for 4347516	osa-u.5 for 4346133	zma-u.5 for sbp29	zma-u.5 for sbp21	zma-u.5 for sbp5

Ortholog

Ortholog ID: 89

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SPL4

SPL-CNR

sbp23

Function^*

squamosa promoter-binding-like protein 3

squamosa promoter-binding-like protein 13A

squamosa promoter-binding-like protein 3

squamosa promoter-binding protein 1

squamosa promoter binding protein-like 4

squamosa promoter-binding-like protein 5

promoter-binding protein SPL9

squamosa promoter-binding-like protein 3

squamosa promoter-binding-like protein 13A

squamosa promoter-binding-like protein 8

squamosa promoter-binding-like protein 7

teosinte glume architecture 1-like

squamosa promoter-binding-like protein 8

SQUAMOSA promoter binding protein-like

squamosa promoter-binding-like protein 8

squamosa promoter-binding protein 1-like

squamosa promoter-binding-like protein 8

squamosa promoter-binding protein 1

squamosa promoter-binding-like protein 4

squamosa promoter-binding-like protein 16

SBP-transcription factor 23

squamosa promoter-binding-like protein 2

squamosa promoter-binding-like protein 17

squamosa promoter-binding-like protein 2

teosinte glume architecture 1

squamosa promoter-binding-like protein 14

squamosa promoter-binding-like protein 8

squamosa promoter-binding-like protein 17

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	6
ppo00592	alpha-Linolenic acid metabolism	2
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	5
vvi04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi00760	Nicotinate and nicotinamide metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00030	Pentose phosphate pathway	5
bna01200	Carbon metabolism	5
bna00073	Cutin, suberine and wax biosynthesis	4
bna00270	Cysteine and methionine metabolism	2
bna00062	Fatty acid elongation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00561	Glycerolipid metabolism	2
cit00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	3
nta00511	Other glycan degradation	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	3
osa00480	Glutathione metabolism	3
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03082	ATP-dependent chromatin remodeling	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

18103048

7454733

100305703

25502503

841749

103868453

100253723

100257602

107924238

107923989

106370056

102628358

102620002

101266455

101256245

102591509

102581816

142161672

107811347

4328461

4346133

100217104

103650833

123121932

123407106

123445251

8060951

8064025

100841788

100824643

5718132

5725317

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 18095562 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18095562 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18095562 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18095562 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**