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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7459538   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial 
 gma-u.5   100780251   recQ-mediated genome instability protein 2 
 mtr-u.5   25492345   recQ-mediated genome instability protein 2 
 ath-u.5   AT1G08390   recQ-mediated instability-like protein 
 vvi-u.5   100265374   uncharacterized LOC100265374 
 sly-u.5   101268839   uncharacterized LOC101268839 
 osa-u.5   9270058   uncharacterized LOC9270058 
 zma-u.5   100382562   uncharacterized LOC100382562 

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Top 50 coexpressed genes to 7459538 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7459538 (ppo-u.5 coexpression data)

CoexMap"18098006"


ppoLOC18098006 | Entrez gene ID : 18098006    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03460 [list] [network] Fanconi anemia pathway (47 genes)
GO BP
GO:0043007 [list] [network] maintenance of rDNA  (2 genes)  IEA  
GO:2000042 [list] [network] negative regulation of double-strand break repair via homologous recombination  (2 genes)  IEA  
GO:0033045 [list] [network] regulation of sister chromatid segregation  (23 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO:0016607 [list] [network] nuclear speck  (21 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO MF
Protein XP_006384684.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_E.R. 4,  nucl 2,  chlo 1  (predict for XP_006384684.1)
Subcellular
localization
TargetP
scret 7,  other 3  (predict for XP_006384684.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7459538

.
gma-u.5
for
100780251

.
mtr-u.5
for
25492345

.
ath-u.5
for
AT1G08390

.
vvi-u.5
for
100265374

.
sly-u.5
for
101268839

.
osa-u.5
for
9270058

.
zma-u.5
for
100382562

.


Ortholog ID: 7783
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sot bdi nta
Symbol AT1G08390 LOC100780251 LOC101268839 LOC9270058 LOC100382562 LOC103871586 LOC100265374 LOC7459538 LOC25492345 LOC123090688 LOC123095705 LOC123447152 LOC107937614 LOC107941262 LOC106415961 LOC106346335 LOC102586282 LOC100821367 LOC107815609
Function* recQ-mediated instability-like protein recQ-mediated genome instability protein 2 uncharacterized LOC101268839 uncharacterized LOC9270058 uncharacterized LOC100382562 recQ-mediated genome instability protein 2 uncharacterized LOC100265374 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial recQ-mediated genome instability protein 2 uncharacterized LOC123090688 uncharacterized LOC123095705 uncharacterized LOC123447152 uncharacterized LOC107937614 uncharacterized LOC107941262 recQ-mediated genome instability protein 2 recQ-mediated genome instability protein 2 uncharacterized LOC102586282 uncharacterized LOC100821367 uncharacterized LOC107815609
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 3
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03460 Fanconi anemia pathway 3
tae04122 Sulfur relay system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot00510 N-Glycan biosynthesis 4
sot00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837359 100780251 101268839 9270058 100382562 103871586 100265374 7459538 25492345 123090688 123095705 123447152 107937614 107941262 106415961 106346335 102586282 100821367 107815609
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