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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G08390   recQ-mediated instability-like protein 
 ath-r.7   AT1G08390   recQ-mediated instability-like protein 
 ath-m.9   AT1G08390   recQ-mediated instability-like protein 
 ath-e.2   AT1G08390   recQ-mediated instability-like protein 
 ath-m.4.bio   AT1G08390   recQ-mediated instability-like protein 
 ath-m.4.hor   AT1G08390   recQ-mediated instability-like protein 
 ath-m.4.lig   AT1G08390   recQ-mediated instability-like protein 
 ath-m.4.str   AT1G08390   recQ-mediated instability-like protein 
 ath-m.4.tis   AT1G08390   recQ-mediated instability-like protein 
 bra-r.6   103871586   recQ-mediated genome instability protein 2 
 bna-r.1   106415961   recQ-mediated genome instability protein 2 
 bna-r.1   106346335   recQ-mediated genome instability protein 2 
 ghi-r.1   107941262   uncharacterized LOC107941262 
 ghi-r.1   107937614   uncharacterized LOC107937614 
 gma-u.5   100780251   recQ-mediated genome instability protein 2 
 vvi-u.5   100265374   uncharacterized LOC100265374 
 ppo-u.5   7459538   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial 
 mtr-u.5   25492345   recQ-mediated genome instability protein 2 
 sly-u.5   101268839   uncharacterized LOC101268839 
 sot-r.1   102586282   uncharacterized LOC102586282 
 nta-r.1   107815609   uncharacterized LOC107815609 
 osa-u.5   9270058   uncharacterized LOC9270058 
 zma-u.5   100382562   uncharacterized LOC100382562 
 tae-r.2   123090687   uncharacterized LOC123090687 
 bdi-r.1   100821367   uncharacterized LOC100821367 

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Top 50 coexpressed genes to AT1G08390 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G08390 (ath-u.5 coexpression data)

CoexMap"837359"


athAT1G08390 | Entrez gene ID : 837359      
Species ath bra bna ghi gma vvi ppo mtr sly sot nta osa zma tae bdi hvu cit cre sbi
Paralog 9 1 2 2 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:2000042 [list] [network] negative regulation of double-strand break repair via homologous recombination  (1 genes)  IMP  
GO:0043007 [list] [network] maintenance of rDNA  (3 genes)  IGI  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IGI  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_001320532.1 [sequence] [blastp]
NP_172315.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001320532.1)
chlo 8,  cyto 1  (predict for NP_172315.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001320532.1)
other 5,  mito 3  (predict for NP_172315.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G08390
ath-r.7
for
AT1G08390
ath-m.9
for
AT1G08390
ath-e.2
for
AT1G08390
ath-m.4.bio
for
AT1G08390
ath-m.4.hor
for
AT1G08390
ath-m.4.lig
for
AT1G08390
ath-m.4.str
for
AT1G08390
ath-m.4.tis
for
AT1G08390
bra-r.6
for
103871586
bna-r.1
for
106415961
bna-r.1
for
106346335
ghi-r.1
for
107941262
ghi-r.1
for
107937614
gma-u.5
for
100780251
vvi-u.5
for
100265374
ppo-u.5
for
7459538
mtr-u.5
for
25492345
sly-u.5
for
101268839
sot-r.1
for
102586282
nta-r.1
for
107815609
osa-u.5
for
9270058
zma-u.5
for
100382562
tae-r.2
for
123090687
bdi-r.1
for
100821367


Ortholog ID: 7783
Species ath bra bna bna ghi ghi gma vvi ppo mtr sly sot nta osa zma tae tae hvu bdi
Symbol AT1G08390 LOC103871586 LOC106415961 LOC106346335 LOC107941262 LOC107937614 LOC100780251 LOC100265374 LOC7459538 LOC25492345 LOC101268839 LOC102586282 LOC107815609 LOC9270058 LOC100382562 LOC123090688 LOC123095705 LOC123447152 LOC100821367
Function* recQ-mediated instability-like protein recQ-mediated genome instability protein 2 recQ-mediated genome instability protein 2 recQ-mediated genome instability protein 2 uncharacterized LOC107941262 uncharacterized LOC107937614 recQ-mediated genome instability protein 2 uncharacterized LOC100265374 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial recQ-mediated genome instability protein 2 uncharacterized LOC101268839 uncharacterized LOC102586282 uncharacterized LOC107815609 uncharacterized LOC9270058 uncharacterized LOC100382562 uncharacterized LOC123090688 uncharacterized LOC123095705 uncharacterized LOC123447152 uncharacterized LOC100821367
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot00510 N-Glycan biosynthesis 4
sot00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 3
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03460 Fanconi anemia pathway 3
tae04122 Sulfur relay system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837359 103871586 106415961 106346335 107941262 107937614 100780251 100265374 7459538 25492345 101268839 102586282 107815609 9270058 100382562 123090688 123095705 123447152 100821367
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