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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18099498   RNA-binding KH domain-containing protein RCF3 
 ppo-r.4   18099498   RNA-binding KH domain-containing protein RCF3 
 vvi-u.5   100253195   KH domain-containing protein At4g18375 
 sly-u.5   101256259   KH domain-containing protein At4g18375 
 osa-u.5   4348996   KH domain-containing protein At4g18375 
 zma-u.5   103626142   KH domain-containing protein HEN4 
 zma-u.5   100193713   uncharacterized LOC100193713 

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Top 50 coexpressed genes to 18099498 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18099498 (ppo-u.5 coexpression data)

CoexMap"18099498"


ppoLOC18099498 | Entrez gene ID : 18099498    
Species ppo vvi sly osa zma hvu mtr sot tae nta bra cit gma ghi bna bdi ath sbi cre
Paralog 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (2323 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_006383459.2 [sequence] [blastp]
XP_024444783.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_006383459.2)
nucl 6,  chlo 1,  cyto 1,  cysk 1,  chlo_mito 1,  golg_plas 1  (predict for XP_024444783.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006383459.2)
other 7  (predict for XP_024444783.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18099498

.
ppo-r.4
for
18099498

.
vvi-u.5
for
100253195

.
sly-u.5
for
101256259

.
osa-u.5
for
4348996

.
zma-u.5
for
103626142

.
zma-u.5
for
100193713

.


Ortholog ID: 13009
Species sly osa zma zma vvi ppo tae tae hvu ghi ghi sbi sot cit bdi nta nta
Symbol LOC101256259 LOC4348996 LOC103626142 LOC100193713 LOC100253195 LOC18099498 LOC123181160 LOC123046870 LOC123432196 LOC107912726 LOC107916676 LOC8067098 LOC102581339 LOC102578050 LOC100833296 LOC107793851 LOC107759303
Function* KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein HEN4 uncharacterized LOC100193713 KH domain-containing protein At4g18375 RNA-binding KH domain-containing protein RCF3 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein HEN4 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03010 Ribosome 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03022 Basal transcription factors 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101256259 4348996 103626142 100193713 100253195 18099498 123181160 123046870 123432196 107912726 107916676 8067098 102581339 102578050 100833296 107793851 107759303
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