ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18099924	uncharacterized LOC18099924
ppo-r.4	18099924	uncharacterized LOC18099924
ppo-u.5	18107811	uncharacterized LOC18107811
gma-u.5	100812215	CCR4-NOT transcription complex subunit 10
gma-u.5	100802507	CCR4-NOT transcription complex subunit 10
mtr-u.5	11444960	CCR4-NOT transcription complex subunit 10
ath-u.5	AT5G35430	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103849237	CCR4-NOT transcription complex subunit 10
bra-r.6	103849216	CCR4-NOT transcription complex subunit 10
vvi-u.5	100252496	uncharacterized LOC100252496
ghi-r.1	121212589	CCR4-NOT transcription complex subunit 10
ghi-r.1	121225227	CCR4-NOT transcription complex subunit 10
ghi-r.1	107962588	CCR4-NOT transcription complex subunit 10
bna-r.1	111205350	CCR4-NOT transcription complex subunit 10
bna-r.1	125607867	CCR4-NOT transcription complex subunit 10-like
bna-r.1	106393763	CCR4-NOT transcription complex subunit 10-like
cit-r.1	102620348	uncharacterized LOC102620348
sly-u.5	101266237	uncharacterized LOC101266237
sot-r.1	102586645	CCR4-NOT transcription complex subunit 10-A
nta-r.1	107773111	uncharacterized LOC107773111
nta-r.1	107827744	uncharacterized LOC107827744
osa-u.5	4346428	uncharacterized LOC4346428
zma-u.5	100383212	Tetratricopeptide repeat (TPR)-like superfamily protein
zma-u.5	118472932	CCR4-NOT transcription complex subunit 10
tae-r.2	123103309	CCR4-NOT transcription complex subunit 10
tae-r.2	123120717	CCR4-NOT transcription complex subunit 10
tae-r.2	123111498	CCR4-NOT transcription complex subunit 10
hvu-r.1	123399448	CCR4-NOT transcription complex subunit 10
sbi-r.1	8062597	CCR4-NOT transcription complex subunit 10
bdi-r.1	100832993	CCR4-NOT transcription complex subunit 10
bdi-r.1	100826144	CCR4-NOT transcription complex subunit 10
cre-r.1	CHLRE_08g376200v5	uncharacterized protein

Top 50 coexpressed genes to 18099924 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18099924 (ppo-u.5 coexpression data)

CoexMap"18099924"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03018 [list] [network] RNA degradation (133 genes)

GO BP

GO:0017148 [list] [network] negative regulation of translation	(28 genes)	IEA
GO:0006402 [list] [network] mRNA catabolic process	(88 genes)	IEA

GO CC

GO:0030014 [list] [network] CCR4-NOT complex

(34 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(4916 genes)

IEA

Protein

XP_006381110.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, mito 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_pero 1, cyto_plas 1

(predict for XP_006381110.3)

Subcellular
localization
TargetP

other 9

(predict for XP_006381110.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18099924	ppo-r.4 for 18099924	ppo-u.5 for 18107811	gma-u.5 for 100812215	gma-u.5 for 100802507	mtr-u.5 for 11444960	ath-u.5 for AT5G35430	bra-r.6 for 103849237	bra-r.6 for 103849216	vvi-u.5 for 100252496	ghi-r.1 for 121212589	ghi-r.1 for 121225227	ghi-r.1 for 107962588	bna-r.1 for 111205350	bna-r.1 for 125607867	bna-r.1 for 106393763	cit-r.1 for 102620348	sly-u.5 for 101266237	sot-r.1 for 102586645	nta-r.1 for 107773111	nta-r.1 for 107827744	osa-u.5 for 4346428	zma-u.5 for 100383212	zma-u.5 for 118472932	tae-r.2 for 123103309	tae-r.2 for 123120717	tae-r.2 for 123111498	hvu-r.1 for 123399448	sbi-r.1 for 8062597	bdi-r.1 for 100832993	bdi-r.1 for 100826144	cre-r.1 for CHLRE_08g376200v5

Ortholog

Ortholog ID: 6092

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC18099924

uncharacterized LOC18107811

CCR4-NOT transcription complex subunit 10

Tetratricopeptide repeat (TPR)-like superfamily protein

CCR4-NOT transcription complex subunit 10

uncharacterized LOC100252496

CCR4-NOT transcription complex subunit 10

CCR4-NOT transcription complex subunit 10-like

uncharacterized LOC102620348

uncharacterized LOC101266237

CCR4-NOT transcription complex subunit 10-A

uncharacterized LOC107773111

uncharacterized LOC107827744

uncharacterized LOC4346428

Tetratricopeptide repeat (TPR)-like superfamily protein

CCR4-NOT transcription complex subunit 10

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	3
ppo03082	ATP-dependent chromatin remodeling	3
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	4
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5
ath03013	Nucleocytoplasmic transport	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03015	mRNA surveillance pathway	2
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	4
sot03018	RNA degradation	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	5
tae03022	Basal transcription factors	3
tae03420	Nucleotide excision repair	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae03018	RNA degradation	3
tae03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	4
tae04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu03018	RNA degradation	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	4
sbi04120	Ubiquitin mediated proteolysis	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

18099924

18107811

100812215

100802507

11444960

833507

103849237

103849216

100252496

121212589

121225227

107901326

125607867

106393763

106387380

102620348

101266237

102586645

107773111

107827744

4346428

100383212

118472932

123103309

123120717

123111498

123399448

8062597

100832993

100826144

5719940

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	1	2	1	3	3	1	1	1	2	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18099924 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18099924 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**