ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18101852	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
ppo-r.4	18101852	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
ppo-u.5	7475964	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
gma-u.5	100789934	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
gma-u.5	100776298	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
mtr-u.5	11409007	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
ath-u.5	FASS	tonneau 2 (TON2)
vvi-u.5	100247694	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
sly-u.5	101244115	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
osa-u.5	4337821	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
zma-u.5	103641393	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
zma-u.5	103632474	probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
zma-u.5	100382292	putative serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

Top 50 coexpressed genes to 18101852 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18101852 (ppo-u.5 coexpression data)

CoexMap"18101852"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03015 [list] [network] mRNA surveillance pathway (164 genes)

pop04382 [list] [network] Cornified envelope formation (45 genes)

GO BP

GO:0035303 [list] [network] regulation of dephosphorylation	(5 genes)	IEA
GO:0030865 [list] [network] cortical cytoskeleton organization	(34 genes)	IEA
GO:0000226 [list] [network] microtubule cytoskeleton organization	(146 genes)	IEA

GO CC

GO:0005813 [list] [network] centrosome	(39 genes)	IEA
GO:0005819 [list] [network] spindle	(56 genes)	IEA

GO MF

GO:0005509 [list] [network] calcium ion binding

(301 genes)

IEA

Protein

XP_024463024.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, nucl 1

(predict for XP_024463024.2)

Subcellular
localization
TargetP

other 6, chlo 5

(predict for XP_024463024.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18101852	ppo-r.4 for 18101852	ppo-u.5 for 7475964	gma-u.5 for 100789934	gma-u.5 for 100776298	mtr-u.5 for 11409007	ath-u.5 for FASS	vvi-u.5 for 100247694	sly-u.5 for 101244115	osa-u.5 for 4337821	zma-u.5 for 103641393	zma-u.5 for 103632474	zma-u.5 for 100382292

Ortholog

Ortholog ID: 6353

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

FASS

Function^*

probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

tonneau 2 (TON2)

probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

putative serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

putative serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo04142	Lysosome	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2
gma04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4
ath04382	Cornified envelope formation	4
ath04075	Plant hormone signal transduction	2
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	3
bra03420	Nucleotide excision repair	2
bra03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03015	mRNA surveillance pathway	2
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi03050	Proteasome	4
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	6
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	5
bna04382	Cornified envelope formation	5
bna03018	RNA degradation	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	5
bna04382	Cornified envelope formation	5
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	4
sly04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	5
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae04141	Protein processing in endoplasmic reticulum	3
tae04382	Cornified envelope formation	3
tae03040	Spliceosome	2
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	6
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	2
bdi03060	Protein export	2
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2
bdi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03020	RNA polymerase	2
cre00052	Galactose metabolism	2
cre00520	Amino sugar and nucleotide sugar metabolism	2
cre01250	Biosynthesis of nucleotide sugars	2

Expression

Expression pattern

Entrez Gene ID^*

18101852

7475964

100776298

100789934

11409007

831976

103851185

103845822

100247694

107916036

107920155

111202822

106369832

102607891

101244115

102596844

107801975

107825632

4337821

103641393

100382292

123191212

123112657

123425344

8069499

100824191

5715693

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	2	1	1	1	1	1	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18101852 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18101852 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**