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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18102461   heterogeneous nuclear ribonucleoprotein 1 
 ppo-r.4   18102461   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7461497   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7494747   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7455708   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100811267   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100786882   heterogeneous nuclear ribonucleoprotein 1 
 mtr-u.5   25484388   heterogeneous nuclear ribonucleoprotein 1 
 ath-u.5   AT2G33410   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT4G14300   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100263471   heterogeneous nuclear ribonucleoprotein 1 
 vvi-u.5   100257917   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101260765   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101264892   heterogeneous nuclear ribonucleoprotein 1-like 
 osa-u.5   4348867   heterogeneous nuclear ribonucleoprotein 1 
 zma-u.5   100280293   uncharacterized LOC100280293 
 zma-u.5   100382683   uncharacterized LOC100382683 

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Top 50 coexpressed genes to 18102461 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18102461 (ppo-u.5 coexpression data)

CoexMap"18102461"


ppoLOC18102461 | Entrez gene ID : 18102461    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 1 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_006378320.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  mito 1,  plas 1,  mito_plas 1  (predict for XP_006378320.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006378320.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18102461

.
ppo-r.4
for
18102461

.
ppo-u.5
for
7461497

.
ppo-u.5
for
7494747

.
ppo-u.5
for
7455708

.
gma-u.5
for
100811267

.
gma-u.5
for
100786882

.
mtr-u.5
for
25484388

.
ath-u.5
for
AT2G33410

.
ath-u.5
for
AT4G14300

.
vvi-u.5
for
100263471

.
vvi-u.5
for
100257917

.
sly-u.5
for
101260765

.
sly-u.5
for
101264892

.
osa-u.5
for
4348867

.
zma-u.5
for
100280293

.
zma-u.5
for
100382683

.


Ortholog ID: 4692
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi nta
Symbol AT4G14300 AT2G33410 LOC100811267 LOC100786882 LOC101260765 LOC101264892 LOC4348867 LOC100382683 LOC100280293 LOC103835199 LOC103857488 LOC100263471 LOC100257917 LOC7494747 LOC7461497 LOC25484388 LOC123045132 LOC123120817 LOC123430641 LOC121215240 LOC107944246 LOC111213586 LOC106439718 LOC110436984 LOC102601968 LOC102604539 LOC102607686 LOC102622156 LOC100832671 LOC107814059
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 uncharacterized LOC100382683 uncharacterized LOC100280293 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 9
gma03015 mRNA surveillance pathway 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 8
gma03040 Spliceosome 8
gma03250 Viral life cycle - HIV-1 3
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma04144 Endocytosis 4
zma05100 Bacterial invasion of epithelial cells 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 5
bra04517 IgSF CAM signaling 5
bra04814 Motor proteins 5
bra00970 Aminoacyl-tRNA biosynthesis 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo03010 Ribosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 4
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 5
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 4
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 10
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 10
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827071 817905 100811267 100786882 101260765 101264892 4348867 100382683 100280293 103835199 103857488 100263471 100257917 7494747 7461497 25484388 123045132 123120817 123430641 121215240 107944246 111213586 106439718 110436984 102601968 102604539 102607686 102622156 100832671 107814059
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