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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18104598   cysteine synthase, chloroplastic/chromoplastic 
 ppo-r.4   18104598   cysteine synthase, chloroplastic/chromoplastic 
 ppo-u.5   7457347   bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial 
 ppo-u.5   7494093   bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial 
 gma-u.5   100818242   cysteine synthase 
 gma-u.5   100815330   cysteine synthase 
 gma-u.5   OAS-TL1   cysteine synthase 
 mtr-u.5   11410728   cysteine synthase 
 mtr-u.5   11438453   S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic 
 mtr-u.5   11441090   cysteine synthase 
 ath-u.5   OASC   O-acetylserine (thiol) lyase isoform C 
 ath-u.5   DES1   L-cysteine desulfhydrase 1 
 ath-u.5   CYSD2   cysteine synthase D2 
 vvi-u.5   109121422   cysteine synthase-like 
 vvi-u.5   100267217   cysteine synthase 
 vvi-u.5   100264196   cysteine synthase 
 sly-u.5   101246283   cysteine synthase 
 sly-u.5   101245992   cysteine synthase-like 
 sly-u.5   101246567   cysteine synthase 
 osa-u.5   4327819   cysteine synthase 
 osa-u.5   4352839   cysteine synthase-like 
 osa-u.5   4335048   bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial 
 zma-u.5   100280321   cysteine synthase 1 
 zma-u.5   100272829   Cysteine synthase mitochondrial 
 zma-u.5   542438   cysteine synthase 2 

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Top 50 coexpressed genes to 18104598 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18104598 (ppo-u.5 coexpression data)

CoexMap"18104598"


ppoLOC18104598 | Entrez gene ID : 18104598    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00270 [list] [network] Cysteine and methionine metabolism (144 genes)
pop00920 [list] [network] Sulfur metabolism (40 genes)
pop01200 [list] [network] Carbon metabolism (347 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
pop01320 [list] [network] Sulfur cycle (23 genes)
GO BP
GO:0009567 [list] [network] double fertilization forming a zygote and endosperm  (6 genes)  IEA  
GO:0009860 [list] [network] pollen tube growth  (8 genes)  IEA  
GO:0006535 [list] [network] cysteine biosynthetic process from serine  (17 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004124 [list] [network] cysteine synthase activity  (13 genes)  IEA  
Protein XP_006376449.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  cyto_E.R. 3  (predict for XP_006376449.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_006376449.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18104598

.
ppo-r.4
for
18104598

.
ppo-u.5
for
7457347

.
ppo-u.5
for
7494093

.
gma-u.5
for
100818242

.
gma-u.5
for
100815330

.
gma-u.5
for
OAS-TL1

.
mtr-u.5
for
11410728

.
mtr-u.5
for
11438453

.
mtr-u.5
for
11441090

.
ath-u.5
for
OASC

.
ath-u.5
for
DES1

.
ath-u.5
for
CYSD2

.
vvi-u.5
for
109121422

.
vvi-u.5
for
100267217

.
vvi-u.5
for
100264196

.
sly-u.5
for
101246283

.
sly-u.5
for
101245992

.
sly-u.5
for
101246567

.
osa-u.5
for
4327819

.
osa-u.5
for
4352839

.
osa-u.5
for
4335048

.
zma-u.5
for
100280321

.
zma-u.5
for
100272829

.
zma-u.5
for
542438

.


Ortholog ID: 256
Species ath ath gma gma sly sly osa osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit bdi bdi nta nta
Symbol OASA1 OASB OAS-TL3 OAS-TL4 LOC101245992 LOC101253940 LOC4334101 LOC4327479 LOC100280321 LOC103862824 LOC103854642 LOC100247043 LOC100264196 LOC18110977 LOC18104598 LOC11443458 LOC11410728 LOC123122184 LOC123110159 LOC123431448 LOC123452200 LOC107928580 LOC107899147 LOC106447111 LOC106391818 CHLRE_08g367600v5 CHLRE_16g685550v5 LOC8085383 LOC102603277 LOC102592568 LOC127901209 LOC100834135 LOC100839817 LOC107788814 LOC107817517
Function* O-acetylserine (thiol) lyase (OAS-TL) isoform A1 O-acetylserine (thiol) lyase B OAS-TL3 cysteine synthase OAS-TL4 cysteine synthase cysteine synthase-like bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial cysteine synthase-like cysteine synthase-like cysteine synthase 1 bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 cysteine synthase cysteine synthase cysteine synthase cysteine synthase, chloroplastic/chromoplastic cysteine synthase, chloroplastic/chromoplastic cysteine synthase bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial cysteine synthase-like bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial cysteine synthase cysteine synthase cysteine synthase cysteine synthase, chloroplastic/chromoplastic cysteine synthase, chloroplastic/chromoplastic uncharacterized protein uncharacterized protein cysteine synthase cysteine synthase-like cysteine synthase-like bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial-like cysteine synthase cysteine synthase bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial cysteine synthase, chloroplastic/chromoplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 13
ath04145 Phagosome 12
ath04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00920 Sulfur metabolism 5
ath01320 Sulfur cycle 4
ath01210 2-Oxocarboxylic acid metabolism 4
ath01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 5
gma00270 Cysteine and methionine metabolism 3
gma01200 Carbon metabolism 3
gma00906 Carotenoid biosynthesis 3
gma00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma01230 Biosynthesis of amino acids 4
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00909 Sesquiterpenoid and triterpenoid biosynthesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 10
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 6
osa04146 Peroxisome 3
osa01230 Biosynthesis of amino acids 3
osa00190 Oxidative phosphorylation 3
osa00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00561 Glycerolipid metabolism 2
osa00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 8
zma01200 Carbon metabolism 6
zma00270 Cysteine and methionine metabolism 5
zma00710 Carbon fixation by Calvin cycle 4
zma00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 4
bra00920 Sulfur metabolism 3
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bra01240 Biosynthesis of cofactors 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi01230 Biosynthesis of amino acids 3
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi04146 Peroxisome 3
vvi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 6
ppo00190 Oxidative phosphorylation 5
ppo01230 Biosynthesis of amino acids 5
ppo00010 Glycolysis / Gluconeogenesis 4
ppo00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00910 Nitrogen metabolism 5
mtr01230 Biosynthesis of amino acids 4
mtr00620 Pyruvate metabolism 3
mtr00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 9
tae01230 Biosynthesis of amino acids 9
tae00710 Carbon fixation by Calvin cycle 6
tae00920 Sulfur metabolism 4
tae01320 Sulfur cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae04142 Lysosome 4
tae04145 Phagosome 4
tae00270 Cysteine and methionine metabolism 3
tae00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 3
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi00270 Cysteine and methionine metabolism 2
ghi00920 Sulfur metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi04145 Phagosome 4
ghi00270 Cysteine and methionine metabolism 3
ghi00920 Sulfur metabolism 3
ghi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 7
bna01230 Biosynthesis of amino acids 7
bna00270 Cysteine and methionine metabolism 6
bna00920 Sulfur metabolism 6
bna01320 Sulfur cycle 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 7
bna00270 Cysteine and methionine metabolism 6
bna00920 Sulfur metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
cre01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00920 Sulfur metabolism 7
cre01320 Sulfur cycle 4
cre00270 Cysteine and methionine metabolism 2
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 4
sot00920 Sulfur metabolism 4
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot01320 Sulfur cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 4
sot00920 Sulfur metabolism 4
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot01320 Sulfur cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 6
cit00380 Tryptophan metabolism 5
cit00270 Cysteine and methionine metabolism 2
cit00460 Cyanoamino acid metabolism 2
cit00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00270 Cysteine and methionine metabolism 3
bdi01230 Biosynthesis of amino acids 3
bdi01240 Biosynthesis of cofactors 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi01240 Biosynthesis of cofactors 3
bdi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 7
nta01230 Biosynthesis of amino acids 7
nta01310 Nitrogen cycle 5
nta00270 Cysteine and methionine metabolism 4
nta00460 Cyanoamino acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta01200 Carbon metabolism 4
nta01230 Biosynthesis of amino acids 4
nta03060 Protein export 2
nta00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827145 818978 100101899 100101900 101245992 101253940 4334101 4327479 100280321 103862824 103854642 100247043 100264196 18110977 18104598 11443458 11410728 123122184 123110159 123431448 123452200 107928580 107899147 106447111 106391818 5721691 5717636 8085383 102603277 102592568 127901209 100834135 100839817 107788814 107817517
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