ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18105715	ASC1-like protein
ppo-r.4	18105715	ASC1-like protein
ppo-u.5	7457532	ceramide synthase LOH2
ppo-u.5	7466946	ceramide synthase 1 LOH3
ppo-u.5	18097787	ceramide synthase LOH2
gma-u.5	100780212	LAG1 longevity assurance homolog 3-like
gma-u.5	100807444	ASC1-like protein
gma-u.5	100782504	ASC1-like protein
mtr-u.5	25494707	ASC1-like protein
mtr-u.5	25501492	ASC1-like protein
mtr-u.5	25494706	ASC1-like protein
ath-u.5	LOH2	LAG1 homologue 2
ath-u.5	LAG1	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
bra-r.6	103859801	LAG1 longevity assurance homolog 2
bra-r.6	103853908	LAG1 longevity assurance homolog 1
bra-r.6	103843044	LAG1 longevity assurance homolog 3
vvi-u.5	104878786	ceramide synthase LOH2
vvi-u.5	100251278	ceramide synthase 1 LOH3
ghi-r.1	107894263	LAG1 longevity assurance homolog 2
ghi-r.1	107918305	LAG1 longevity assurance homolog 3
ghi-r.1	107926687	ASC1-like protein 1
bna-r.1	106434774	ceramide synthase 1 LOH3
bna-r.1	106431285	ceramide synthase LOH1-like
bna-r.1	106411939	ceramide synthase 1 LOH3
cit-r.1	102609029	ASC1-like protein
cit-r.1	102611016	ceramide synthase 1 LOH3
cit-r.1	102616134	ceramide synthase LOH2
sly-u.5	ASCL	ASC1-like protein
sly-u.5	101267275	ceramide synthase LOH2
sot-r.1	102598384	ASC1-like protein
sot-r.1	102597726	LAG1 longevity assurance homolog 2
sot-r.1	102604704	protein ASC1
nta-r.1	107780397	ASC1-like protein
nta-r.1	107776446	ceramide synthase LOH2
nta-r.1	107784206	ceramide synthase LOH2
osa-u.5	9268169	ASC1-like protein 1
osa-u.5	4332339	ASC1-like protein 3
osa-u.5	4330600	ASC1-like protein 2
zma-u.5	100193560	LAG1 longevity assurance homolog 3
zma-u.5	100216857	ASC1-like protein 2
zma-u.5	100282886	ASC1-like protein
tae-r.2	123097976	ASC1-like protein 3
tae-r.2	123092671	ASC1-like protein 3
tae-r.2	123085368	ASC1-like protein 3
hvu-r.1	123400987	ASC1-like protein 2
hvu-r.1	123395522	ASC1-like protein 1
hvu-r.1	123395469	ASC1-like protein 1
sbi-r.1	8078808	ASC1-like protein 3
sbi-r.1	8065380	ASC1-like protein 1
sbi-r.1	8070567	ASC1-like protein 1
bdi-r.1	100842490	ASC1-like protein 1
bdi-r.1	100822162	ASC1-like protein 3
bdi-r.1	100843071	ASC1-like protein 1
cre-r.1	CHLRE_09g400516v5	uncharacterized protein
cre-r.1	CHLRE_17g726400v5	uncharacterized protein

Top 50 coexpressed genes to 18105715 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18105715 (ppo-u.5 coexpression data)

CoexMap"18105715"

[Cytoscape]

Annotation

functional annotation

KEGG

pop00600 [list] [network] Sphingolipid metabolism (42 genes)

GO BP

GO:0046513 [list] [network] ceramide biosynthetic process

(17 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum	(618 genes)	IEA
GO:0016020 [list] [network] membrane	(3780 genes)	IEA

GO MF

GO:0050291 [list] [network] sphingosine N-acyltransferase activity

(5 genes)

IEA

Protein

XP_006374371.1 [sequence] [blastp]
XP_024441791.1 [sequence] [blastp]
XP_024441793.1 [sequence] [blastp]
XP_024441794.1 [sequence] [blastp]
XP_024441795.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, vacu 3, cyto_plas 3	(predict for XP_006374371.1)
cyto 4, vacu 2, cyto_nucl 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_024441791.1)
cyto 4, vacu 2, cyto_nucl 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_024441793.1)
plas 5, cyto_plas 3, E.R. 3, chlo 1, golg 1	(predict for XP_024441794.1)
plas 5, cyto_plas 3, E.R. 3, mito 1, vacu 1	(predict for XP_024441795.1)

Subcellular
localization
TargetP

other 8, scret 4	(predict for XP_006374371.1)
other 8, scret 4	(predict for XP_024441791.1)
other 8, scret 4	(predict for XP_024441793.1)
scret 5, mito 3	(predict for XP_024441794.1)
mito 3, scret 3	(predict for XP_024441795.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18105715	ppo-r.4 for 18105715	ppo-u.5 for 7457532	ppo-u.5 for 7466946	ppo-u.5 for 18097787	gma-u.5 for 100780212	gma-u.5 for 100807444	gma-u.5 for 100782504	mtr-u.5 for 25494707	mtr-u.5 for 25501492	mtr-u.5 for 25494706	ath-u.5 for LOH2	ath-u.5 for LAG1	bra-r.6 for 103859801	bra-r.6 for 103853908	bra-r.6 for 103843044	vvi-u.5 for 104878786	vvi-u.5 for 100251278	ghi-r.1 for 107894263	ghi-r.1 for 107918305	ghi-r.1 for 107926687	bna-r.1 for 106434774	bna-r.1 for 106431285	bna-r.1 for 106411939	cit-r.1 for 102609029	cit-r.1 for 102611016	cit-r.1 for 102616134	sly-u.5 for ASCL	sly-u.5 for 101267275	sot-r.1 for 102598384	sot-r.1 for 102597726	sot-r.1 for 102604704	nta-r.1 for 107780397	nta-r.1 for 107776446	nta-r.1 for 107784206	osa-u.5 for 9268169	osa-u.5 for 4332339	osa-u.5 for 4330600	zma-u.5 for 100193560	zma-u.5 for 100216857	zma-u.5 for 100282886	tae-r.2 for 123097976	tae-r.2 for 123092671	tae-r.2 for 123085368	hvu-r.1 for 123400987	hvu-r.1 for 123395522	hvu-r.1 for 123395469	sbi-r.1 for 8078808	sbi-r.1 for 8065380	sbi-r.1 for 8070567	bdi-r.1 for 100842490	bdi-r.1 for 100822162	bdi-r.1 for 100843071	cre-r.1 for CHLRE_09g400516v5	cre-r.1 for CHLRE_17g726400v5

Ortholog

Ortholog ID: 633

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LAG1

LAG13

ASCL

Function^*

ASC1-like protein

ceramide synthase 1 LOH3

ceramide synthase LOH2

ASC1-like protein

LAG1 longevity assurance homolog 2

ASC1-like protein

LAG1 longevity assurance homolog 2

TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein

LAG1 longevity assurance-like protein

LAG1 longevity assurance homolog 1

LAG1 longevity assurance homolog 2

ceramide synthase LOH2

ceramide synthase 1 LOH3

LAG1 longevity assurance homolog 3

ceramide synthase LOH2

ASC1-like protein

ceramide synthase 1 LOH3

ceramide synthase LOH2

ceramide synthase LOH2-like

ASC1-like protein

ceramide synthase LOH2

LAG1 longevity assurance homolog 2

protein ASC1

ASC1-like protein

ceramide synthase LOH2

ASC1-like protein

ASC1-like protein 3

ASC1-like protein 2

ASC1-like protein 1

LAG1 longevity assurance homolog 3

ASC1-like protein 2

ASC1-like protein

ASC1-like protein 3

ASC1-like protein 2

ASC1-like protein 1

ASC1-like protein 2

ASC1-like protein 1

ASC1-like protein 3

ASC1-like protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	5
ppo01230	Biosynthesis of amino acids	5
ppo00010	Glycolysis / Gluconeogenesis	4
ppo00710	Carbon fixation by Calvin cycle	3
ppo00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo00190	Oxidative phosphorylation	2
ppo04145	Phagosome	2
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00600	Sphingolipid metabolism	2
gma03008	Ribosome biogenesis in eukaryotes	2
gma04712	Circadian rhythm - plant	2
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00600	Sphingolipid metabolism	2
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00600	Sphingolipid metabolism	2
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	3
ath00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	5
bra00020	Citrate cycle (TCA cycle)	3
bra00270	Cysteine and methionine metabolism	3
bra00566	Sulfoquinovose metabolism	3
bra00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit04075	Plant hormone signal transduction	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	3
sly01240	Biosynthesis of cofactors	2
sly00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00360	Phenylalanine metabolism	5
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	2
nta00650	Butanoate metabolism	2
nta04146	Peroxisome	2
nta00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00600	Sphingolipid metabolism	2
nta00061	Fatty acid biosynthesis	2
nta01212	Fatty acid metabolism	2
nta03082	ATP-dependent chromatin remodeling	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00280	Valine, leucine and isoleucine degradation	2
nta00650	Butanoate metabolism	2
nta04146	Peroxisome	2
nta00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2
zma04070	Phosphatidylinositol signaling system	2
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00600	Sphingolipid metabolism	2
hvu03060	Protein export	2
hvu04626	Plant-pathogen interaction	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	8
bdi00510	N-Glycan biosynthesis	5
bdi00513	Various types of N-glycan biosynthesis	4
bdi03060	Protein export	2
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00460	Cyanoamino acid metabolism	2
bdi00500	Starch and sucrose metabolism	2
bdi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00600	Sphingolipid metabolism	4
cre04382	Cornified envelope formation	2
cre00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00514	Other types of O-glycan biosynthesis	4
cre00600	Sphingolipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

18105715

7466946

18097787

100807444

100803951

100804749

25501492

25494706

11444594

822140

837919

103853908

103869475

104878786

100251278

107946345

107893781

106390312

106379803

106360105

102611016

102616134

102628173

543781

101267275

102597726

102604704

107780397

107784206

107759145

4332339

4330600

4329785

100193560

100216857

100282886

123085368

123400987

123395469

123394943

8065380

8070567

8077702

100842490

100822162

100843071

5723144

5722791

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	2	3	2	3	3	3	2	3	3	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18105715 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18105715 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**