ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18107227	uridine/cytidine kinase UKL1, chloroplastic
ppo-r.4	18107227	uridine/cytidine kinase UKL1, chloroplastic
ppo-u.5	7467715	uridine/cytidine kinase UKL1, chloroplastic
ppo-u.5	7471698	uridine kinase-like protein 3
gma-u.5	100798205	uridine kinase-like protein 3
gma-u.5	100792258	uridine kinase-like protein 3
mtr-u.5	11407137	uridine kinase-like protein 1, chloroplastic
mtr-u.5	11416863	uridine kinase-like protein 5
mtr-u.5	11433705	uridine kinase-like protein 4
ath-u.5	UKL2	uridine kinase-like 2
ath-u.5	UKL4	uridine kinase-like 4
bra-r.6	103875242	uridine kinase-like protein 2, chloroplastic
bra-r.6	103866273	uridine kinase-like protein 4
bra-r.6	103854261	uridine kinase-like protein 2, chloroplastic
vvi-u.5	100257790	uridine/cytidine kinase UKL1, chloroplastic
vvi-u.5	100259975	uridine kinase-like protein 3
vvi-u.5	100257659	uridine/cytidine kinase UKL1, chloroplastic
ghi-r.1	107931072	uridine kinase-like protein 3
ghi-r.1	107888854	uridine kinase-like protein 1, chloroplastic
ghi-r.1	107895166	uridine kinase-like protein 3
bna-r.1	106402052	uridine/cytidine kinase UKL1, chloroplastic
bna-r.1	106391045	uridine/cytidine kinase UKL1, chloroplastic
bna-r.1	106389340	uridine/cytidine kinase UKL1, chloroplastic-like
cit-r.1	102611190	uridine kinase-like protein 3
cit-r.1	102626560	uridine/cytidine kinase UKL1, chloroplastic
cit-r.1	102609260	uridine kinase-like protein 5
sly-u.5	101244205	uridine kinase-like protein 3
sly-u.5	101245556	uridine kinase-like protein 1
sly-u.5	101253028	uridine kinase-like protein 3
sot-r.1	102604082	uridine kinase-like protein 3
sot-r.1	102601704	uridine kinase-like protein 3
nta-r.1	107773120	uridine kinase-like protein 4
nta-r.1	107778619	uridine kinase-like protein 3
nta-r.1	107780921	uridine kinase-like protein 5
osa-u.5	4328991	uridine kinase-like protein 3
osa-u.5	4346121	uridine/cytidine kinase UKL1, chloroplastic
osa-u.5	4347509	uridine/cytidine kinase UKL1, chloroplastic
zma-u.5	100191860	Uridine kinase-like protein 2 chloroplastic
zma-u.5	103626500	uridine kinase-like protein 3
zma-u.5	103655002	uridine kinase-like protein 3
tae-r.2	123086638	uridine kinase-like protein 3
tae-r.2	123104303	uridine kinase-like protein 1, chloroplastic
tae-r.2	123091341	uridine kinase-like protein 3
hvu-r.1	123448169	uridine kinase-like protein 1, chloroplastic
hvu-r.1	123447907	uridine kinase-like protein 3
hvu-r.1	123399763	uridine kinase-like protein 1, chloroplastic
sbi-r.1	8060619	uridine kinase-like protein 2, chloroplastic
sbi-r.1	8072875	uridine kinase-like protein 4
sbi-r.1	110434973	uridine kinase-like protein 3
bdi-r.1	100840869	uridine kinase-like protein 1, chloroplastic
bdi-r.1	100846155	uridine kinase-like protein 3
bdi-r.1	100846619	uridine kinase-like protein 3
cre-r.1	CHLRE_13g573800v5	uncharacterized protein
cre-r.1	CHLRE_16g681850v5	uncharacterized protein

Top 50 coexpressed genes to 18107227 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18107227 (ppo-u.5 coexpression data)

CoexMap"18107227"

[Cytoscape]

Annotation

functional annotation

KEGG

pop00240 [list] [network] Pyrimidine metabolism (83 genes)

pop01232 [list] [network] Nucleotide metabolism (100 genes)

GO BP

GO CC

GO:0009507 [list] [network] chloroplast	(718 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(6111 genes)	IEA

GO MF

GO:0016301 [list] [network] kinase activity	(1762 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2559 genes)	IEA

Protein

XP_006373224.2 [sequence] [blastp]
XP_052304732.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3	(predict for XP_006373224.2)
cyto 6, nucl 2, chlo 1, extr 1, cysk 1	(predict for XP_052304732.1)

Subcellular
localization
TargetP

chlo 5, other 5	(predict for XP_006373224.2)
chlo 5, other 5	(predict for XP_052304732.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18107227	ppo-r.4 for 18107227	ppo-u.5 for 7467715	ppo-u.5 for 7471698	gma-u.5 for 100798205	gma-u.5 for 100792258	mtr-u.5 for 11407137	mtr-u.5 for 11416863	mtr-u.5 for 11433705	ath-u.5 for UKL2	ath-u.5 for UKL4	bra-r.6 for 103875242	bra-r.6 for 103866273	bra-r.6 for 103854261	vvi-u.5 for 100257790	vvi-u.5 for 100259975	vvi-u.5 for 100257659	ghi-r.1 for 107931072	ghi-r.1 for 107888854	ghi-r.1 for 107895166	bna-r.1 for 106402052	bna-r.1 for 106391045	bna-r.1 for 106389340	cit-r.1 for 102611190	cit-r.1 for 102626560	cit-r.1 for 102609260	sly-u.5 for 101244205	sly-u.5 for 101245556	sly-u.5 for 101253028	sot-r.1 for 102604082	sot-r.1 for 102601704	nta-r.1 for 107773120	nta-r.1 for 107778619	nta-r.1 for 107780921	osa-u.5 for 4328991	osa-u.5 for 4346121	osa-u.5 for 4347509	zma-u.5 for 100191860	zma-u.5 for 103626500	zma-u.5 for 103655002	tae-r.2 for 123086638	tae-r.2 for 123104303	tae-r.2 for 123091341	hvu-r.1 for 123448169	hvu-r.1 for 123447907	hvu-r.1 for 123399763	sbi-r.1 for 8060619	sbi-r.1 for 8072875	sbi-r.1 for 110434973	bdi-r.1 for 100840869	bdi-r.1 for 100846155	bdi-r.1 for 100846619	cre-r.1 for CHLRE_13g573800v5	cre-r.1 for CHLRE_16g681850v5

Ortholog

Ortholog ID: 750

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

UKL2

UKL3

Function^*

uridine/cytidine kinase UKL1, chloroplastic

uridine kinase-like protein 3

uridine kinase-like protein

uridine kinase-like protein 3

uridine kinase-like protein 1, chloroplastic

uridine kinase-like protein 5

uridine kinase-like protein 1, chloroplastic

uridine kinase-like 2

uridine kinase/uracil phosphoribosyltransferase 1

uridine kinase-like 3

uridine kinase-like protein 2, chloroplastic

uridine kinase-like protein 4

uridine kinase-like protein 3

uridine/cytidine kinase UKL1, chloroplastic

uridine kinase-like protein 3

uridine/cytidine kinase UKL1, chloroplastic

uridine kinase-like protein 3

uridine/cytidine kinase UKL1, chloroplastic

uridine kinase-like protein 5

uridine kinase-like protein 3

uridine kinase-like protein 1

uridine kinase-like protein 3

uridine kinase-like protein 1, chloroplastic

uridine kinase-like protein 5

uridine kinase-like protein 3

uridine/cytidine kinase UKL1, chloroplastic

uridine kinase-like protein 3

uridine/cytidine kinase UKL1, chloroplastic

uridine kinase-like protein 3

uncharacterized LOC100282453

uridine kinase-like protein 3

uridine kinase-like protein 1, chloroplastic

uridine kinase-like protein 3

uridine kinase-like protein 1, chloroplastic

uridine kinase-like protein 2, chloroplastic

uridine kinase-like protein 4

uridine kinase-like protein 3

uridine kinase-like protein 2, chloroplastic

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	3
ppo04120	Ubiquitin mediated proteolysis	2
ppo03008	Ribosome biogenesis in eukaryotes	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	5
ppo01200	Carbon metabolism	3
ppo00190	Oxidative phosphorylation	2
ppo04142	Lysosome	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4
gma01200	Carbon metabolism	3
gma00010	Glycolysis / Gluconeogenesis	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	6
gma04145	Phagosome	5
gma04814	Motor proteins	2
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04145	Phagosome	2
mtr04517	IgSF CAM signaling	2
mtr04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	10
mtr04145	Phagosome	4
mtr00510	N-Glycan biosynthesis	2
mtr04626	Plant-pathogen interaction	2
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	5
ath00010	Glycolysis / Gluconeogenesis	3
ath04120	Ubiquitin mediated proteolysis	2
ath00710	Carbon fixation by Calvin cycle	2
ath01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	4
ath00270	Cysteine and methionine metabolism	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	7
ath00640	Propanoate metabolism	5
ath01210	2-Oxocarboxylic acid metabolism	4
ath00785	Lipoic acid metabolism	3
ath00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	5
bra04145	Phagosome	3
bra04517	IgSF CAM signaling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	6
ghi01232	Nucleotide metabolism	6
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	4
ghi00561	Glycerolipid metabolism	4
ghi00564	Glycerophospholipid metabolism	4
ghi00240	Pyrimidine metabolism	4
ghi01232	Nucleotide metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	6
bna01232	Nucleotide metabolism	4
bna00410	beta-Alanine metabolism	2
bna00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	4
bna03460	Fanconi anemia pathway	4
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	5
bna01232	Nucleotide metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00280	Valine, leucine and isoleucine degradation	3
cit00330	Arginine and proline metabolism	3
cit00053	Ascorbate and aldarate metabolism	2
cit00410	beta-Alanine metabolism	2
cit00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	3
cit04120	Ubiquitin mediated proteolysis	2
cit03018	RNA degradation	2
cit00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot00280	Valine, leucine and isoleucine degradation	2
sot01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot04141	Protein processing in endoplasmic reticulum	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	5
nta01232	Nucleotide metabolism	5
nta04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta00020	Citrate cycle (TCA cycle)	3
nta00640	Propanoate metabolism	3
nta00620	Pyruvate metabolism	3
nta00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00280	Valine, leucine and isoleucine degradation	5
osa00310	Lysine degradation	4
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	7
osa00020	Citrate cycle (TCA cycle)	6
osa01210	2-Oxocarboxylic acid metabolism	5
osa00010	Glycolysis / Gluconeogenesis	4
osa00785	Lipoic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma03040	Spliceosome	3
zma04075	Plant hormone signal transduction	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	6
tae01232	Nucleotide metabolism	6
tae04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	4
tae01200	Carbon metabolism	4
tae01230	Biosynthesis of amino acids	4
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae00100	Steroid biosynthesis	3
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00240	Pyrimidine metabolism	3
hvu01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00010	Glycolysis / Gluconeogenesis	3
hvu01200	Carbon metabolism	3
hvu01240	Biosynthesis of cofactors	3
hvu00052	Galactose metabolism	2
hvu00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2
sbi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04142	Lysosome	3
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	2
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi00562	Inositol phosphate metabolism	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00280	Valine, leucine and isoleucine degradation	8
bdi00640	Propanoate metabolism	4
bdi00410	beta-Alanine metabolism	3
bdi01200	Carbon metabolism	3
bdi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3
cre01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00500	Starch and sucrose metabolism	6
cre00520	Amino sugar and nucleotide sugar metabolism	4
cre01250	Biosynthesis of nucleotide sugars	4
cre01200	Carbon metabolism	3
cre00010	Glycolysis / Gluconeogenesis	3

Expression

Expression pattern

Entrez Gene ID^*

18107227

7467715

7471698

100527893

100777904

11407137

11416863

25497859

822338

834088

842031

103875242

103866273

100259975

100257659

107895166

107922201

106402052

106391045

106376960

102611190

102626560

102609260

101244205

101245556

102604082

102601516

107780921

107784213

107821621

4328991

4346121

4350243

103626500

103655002

100282453

123086638

123104303

123112559

123447907

123399763

123409759

8060619

8072875

110434973

100846155

100846619

100835737

5719196

5717563

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	3	3	3	3	3	3	2	3	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18107227 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18107227 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**