ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18108544	60S ribosomal protein L5
ppo-r.4	18108544	60S ribosomal protein L5
ppo-u.5	18104605	60S ribosomal protein L5
ppo-u.5	7469360	60S ribosomal protein L5
gma-u.5	100786189	60S ribosomal protein L5
gma-u.5	100805868	60S ribosomal protein L5
gma-u.5	100817746	60S ribosomal protein L5
mtr-u.5	11411613	60S ribosomal protein L5-2
mtr-u.5	25500767	60S ribosomal protein L5
ath-u.5	ATL5	ribosomal protein L5
ath-u.5	RPL5B	ribosomal protein L5 B
vvi-u.5	100262824	large ribosomal subunit protein uL18
vvi-u.5	100242372	large ribosomal subunit protein uL18
sly-u.5	101253089	60S ribosomal protein L5-like
sly-u.5	101245873	large ribosomal subunit protein uL18
sly-u.5	101262823	large ribosomal subunit protein uL18
osa-u.5	4325100	60S ribosomal protein L5-1-like
osa-u.5	9271934	60S ribosomal protein L5-2-like
zma-u.5	103631647	60S ribosomal protein L5-1
zma-u.5	103650892	60S ribosomal protein L5-1
zma-u.5	100284917	60S ribosomal protein L5-1

Top 50 coexpressed genes to 18108544 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18108544 (ppo-u.5 coexpression data)

CoexMap"18108544"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03010 [list] [network] Ribosome (698 genes)

GO BP

GO:0000027 [list] [network] ribosomal large subunit assembly	(33 genes)	IEA
GO:0006412 [list] [network] translation	(598 genes)	IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(171 genes)	IEA
GO:0005840 [list] [network] ribosome	(453 genes)	IEA

GO MF

GO:0008097 [list] [network] 5S rRNA binding	(16 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(439 genes)	IEA

Protein

XP_006371546.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, chlo_mito 4, mito 3, nucl 2

(predict for XP_006371546.1)

Subcellular
localization
TargetP

mito 8, other 3

(predict for XP_006371546.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18108544 .	ppo-r.4 for 18108544 .	ppo-u.5 for 18104605 .	ppo-u.5 for 7469360 .	gma-u.5 for 100786189 .	gma-u.5 for 100805868 .	gma-u.5 for 100817746 .	mtr-u.5 for 11411613 .	mtr-u.5 for 25500767 .	ath-u.5 for ATL5 .	ath-u.5 for RPL5B .	vvi-u.5 for 100262824 .	vvi-u.5 for 100242372 .	sly-u.5 for 101253089 .	sly-u.5 for 101245873 .	sly-u.5 for 101262823 .	osa-u.5 for 4325100 .	osa-u.5 for 9271934 .	zma-u.5 for 103631647 .	zma-u.5 for 103650892 .	zma-u.5 for 100284917 .

Ortholog

Ortholog ID: 2223

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

ATL5

RPL5B

Function^*

ribosomal protein L5

ribosomal protein L5 B

60S ribosomal protein L5

large ribosomal subunit protein uL18

60S ribosomal protein L5-like

60S ribosomal protein L5-2-like

60S ribosomal protein L5-1-like

60S ribosomal protein L5-1

large ribosomal subunit protein uL18

60S ribosomal protein L5

60S ribosomal protein L5-2

60S ribosomal protein L5-1

60S ribosomal protein L5-1-like

60S ribosomal protein L5

60S ribosomal protein L5-2-like

60S ribosomal protein L5-1

ribosomal protein L5

60S ribosomal protein L5-1

uncharacterized LOC102577675

60S ribosomal protein L5-like

60S ribosomal protein L5

60S ribosomal protein L5-1

large ribosomal subunit protein uL18-like

large ribosomal subunit protein uL18

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	6
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	12
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	14
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	17
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	18
sbi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	14
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	11
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	10

Expression

Expression pattern

Entrez Gene ID^*

822138

833970

100785668

100786189

101245873

101253089

9271934

4325100

103631647

103650892

103860287

103828552

100262824

100242372

18104605

7469360

25500767

11411613

123045417

123104893

123426672

123452092

107954724

107914591

111198720

106390803

5715904

8056106

8085680

102577675

102594641

102618756

102627525

100839469

100833119

142179389

107784297

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	4	3	2	2	2	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18108544 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18108544 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**