ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	18108769	uncharacterized LOC18108769
ppo-r.4	18108769	uncharacterized LOC18108769
gma-u.5	100815710	uncharacterized LOC100815710
mtr-u.5	11446796	uncharacterized LOC11446796
mtr-u.5	11420152	uncharacterized LOC11420152
mtr-u.5	11416237	uncharacterized LOC11416237
ath-u.5	AT1G05970	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103844081	uncharacterized LOC103844081
vvi-u.5	100255901	uncharacterized LOC100255901
ghi-r.1	107896938	uncharacterized LOC107896938
ghi-r.1	107914668	uncharacterized LOC107914668
bna-r.1	106371152	uncharacterized LOC106371152
bna-r.1	BNAC05G04090D	uncharacterized BNAC05G04090D
cit-r.1	102617489	uncharacterized LOC102617489
sly-u.5	101249221	ASI1-immunoprecipitated protein 1
sot-r.1	102588408	uncharacterized LOC102588408
sot-r.1	102599498	uncharacterized LOC102599498
sot-r.1	102588084	uncharacterized LOC102588084
nta-r.1	107760579	ASI1-immunoprecipitated protein 1-like
nta-r.1	107829794	ASI1-immunoprecipitated protein 1-like
nta-r.1	107762157	ASI1-immunoprecipitated protein 1
osa-u.5	4330267	ASI1-immunoprecipitated protein 1
osa-u.5	4337492	ASI1-immunoprecipitated protein 1
osa-u.5	4346396	ASI1-immunoprecipitated protein 1
zma-u.5	100191231	uncharacterized LOC100191231
zma-u.5	103646173	RNA-binding region RNP-1
tae-r.2	123082410	uncharacterized LOC123082410
tae-r.2	123055365	uncharacterized LOC123055365
tae-r.2	123090724	uncharacterized LOC123090724
hvu-r.1	123406327	uncharacterized LOC123406327
hvu-r.1	123447212	uncharacterized LOC123447212
sbi-r.1	8076511	uncharacterized LOC8076511
bdi-r.1	100834153	uncharacterized LOC100834153

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1480 genes)

IEA

Protein

XP_024444946.1 [sequence] [blastp]
XP_024444947.1 [sequence] [blastp]
XP_024444948.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, mito 2, chlo 1	(predict for XP_024444946.1)
cyto 6, mito 2, chlo 1	(predict for XP_024444947.1)
cyto 6, mito 2, chlo 1	(predict for XP_024444948.1)

Subcellular
localization
TargetP

other 8	(predict for XP_024444946.1)
other 8	(predict for XP_024444947.1)
other 8	(predict for XP_024444948.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18108769	ppo-r.4 for 18108769	gma-u.5 for 100815710	mtr-u.5 for 11446796	mtr-u.5 for 11420152	mtr-u.5 for 11416237	ath-u.5 for AT1G05970	bra-r.6 for 103844081	vvi-u.5 for 100255901	ghi-r.1 for 107896938	ghi-r.1 for 107914668	bna-r.1 for 106371152	bna-r.1 for BNAC05G04090D	cit-r.1 for 102617489	sly-u.5 for 101249221	sot-r.1 for 102588408	sot-r.1 for 102599498	sot-r.1 for 102588084	nta-r.1 for 107760579	nta-r.1 for 107829794	nta-r.1 for 107762157	osa-u.5 for 4330267	osa-u.5 for 4337492	osa-u.5 for 4346396	zma-u.5 for 100191231	zma-u.5 for 103646173	tae-r.2 for 123082410	tae-r.2 for 123055365	tae-r.2 for 123090724	hvu-r.1 for 123406327	hvu-r.1 for 123447212	sbi-r.1 for 8076511	bdi-r.1 for 100834153

Ortholog

Ortholog ID: 5188

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC18108769

uncharacterized LOC100815710

uncharacterized LOC11446796

uncharacterized LOC11420152

uncharacterized LOC11416237

RNA-binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC103844081

uncharacterized LOC100255901

uncharacterized LOC107896938

uncharacterized LOC107914668

uncharacterized LOC106371152

uncharacterized BNAC05G04090D

uncharacterized LOC102617489

ASI1-immunoprecipitated protein 1

uncharacterized LOC102588408

uncharacterized LOC102599498

uncharacterized LOC102588084

ASI1-immunoprecipitated protein 1-like

ASI1-immunoprecipitated protein 1

uncharacterized LOC100191231

RNA-binding region RNP-1

uncharacterized LOC123055365

uncharacterized LOC123090724

uncharacterized LOC123129121

uncharacterized LOC123406327

uncharacterized LOC123447212

uncharacterized LOC8076511

uncharacterized LOC100834153

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	3
ppo00230	Purine metabolism	2
ppo01232	Nucleotide metabolism	2
ppo03008	Ribosome biogenesis in eukaryotes	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00052	Galactose metabolism	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03060	Protein export	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	3
mtr03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	9
bna04141	Protein processing in endoplasmic reticulum	9
bna03083	Polycomb repressive complex	8
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	6
bna04120	Ubiquitin mediated proteolysis	6
bna04141	Protein processing in endoplasmic reticulum	6
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	4
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2
tae00010	Glycolysis / Gluconeogenesis	2
tae00030	Pentose phosphate pathway	2
tae00051	Fructose and mannose metabolism	2
tae00710	Carbon fixation by Calvin cycle	2

Expression

Expression pattern

Entrez Gene ID^*

18108769

100815710

11446796

11420152

11416237

837107

103844081

100255901

107896938

107914668

106371152

106401864

102617489

101249221

102588408

102599498

102588084

107760579

107829794

107762157

4330267

4337492

4346396

100191231

103646173

123055365

123090724

123129121

123406327

123447212

8076511

100834153

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 18108769 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18108769 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	3	1	1	1	2	2	1	1	3	3	3	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18108769 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18108769 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**