ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	25482040	ruBisCO large subunit-binding protein subunit beta, chloroplastic
mtr-r.5	25482040	ruBisCO large subunit-binding protein subunit beta, chloroplastic
mtr-u.5	25482039	ruBisCO large subunit-binding protein subunit beta, chloroplastic
mtr-u.5	25492419	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
mtr-u.5	120580586	chaperonin 60 subunit beta 4, chloroplastic
gma-u.5	100786724	chaperonin 60 subunit alpha 2, chloroplastic
gma-u.5	100819369	ruBisCO large subunit-binding protein subunit beta, chloroplastic
gma-u.5	100806471	ruBisCO large subunit-binding protein subunit alpha
ppo-u.5	7483228	chaperonin 60 subunit beta 2, chloroplastic
ppo-u.5	7491161	ruBisCO large subunit-binding protein subunit alpha
ppo-u.5	7482225	chaperonin 60 subunit beta 4, chloroplastic
ath-u.5	CPN60B	chaperonin 60 beta
ath-u.5	CPN60A	chaperonin-60alpha
ath-u.5	Cpn60beta2	TCP-1/cpn60 chaperonin family protein
vvi-u.5	100257653	chaperonin 60 subunit alpha 2, chloroplastic
vvi-u.5	100251252	chaperonin 60 subunit beta 4, chloroplastic
vvi-u.5	100253324	ruBisCO large subunit-binding protein subunit alpha
sly-u.5	101265242	ruBisCO large subunit-binding protein subunit alpha, chloroplastic
sly-u.5	101250405	chaperonin 60 subunit beta 4, chloroplastic
sly-u.5	101253117	ruBisCO large subunit-binding protein subunit beta, chloroplastic
osa-u.5	107275738	chaperonin 60 subunit beta 4, chloroplastic
osa-u.5	4327993	ruBisCO large subunit-binding protein subunit beta, chloroplastic
osa-u.5	9270136	ruBisCO large subunit-binding protein subunit alpha
zma-u.5	100281701	RuBisCO large subunit-binding protein subunit alpha
zma-u.5	100280498	ruBisCO large subunit-binding protein subunit beta
zma-u.5	103629384	ruBisCO large subunit-binding protein subunit beta, chloroplastic

Top 50 coexpressed genes to 25482040 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 25482040 (mtr-u.5 coexpression data)

CoexMap"25482040"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr03018 [list] [network] RNA degradation (117 genes)

GO BP

GO:0042026 [list] [network] protein refolding

(20 genes)

IEA

GO CC

GO MF

GO:0140662 [list] [network] ATP-dependent protein folding chaperone	(96 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2502 genes)	IEA

Protein

XP_013465956.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_013465956.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_013465956.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25482040	mtr-r.5 for 25482040	mtr-u.5 for 25482039	mtr-u.5 for 25492419	mtr-u.5 for 120580586	gma-u.5 for 100786724	gma-u.5 for 100819369	gma-u.5 for 100806471	ppo-u.5 for 7483228	ppo-u.5 for 7491161	ppo-u.5 for 7482225	ath-u.5 for CPN60B	ath-u.5 for CPN60A	ath-u.5 for Cpn60beta2	vvi-u.5 for 100257653	vvi-u.5 for 100251252	vvi-u.5 for 100253324	sly-u.5 for 101265242	sly-u.5 for 101250405	sly-u.5 for 101253117	osa-u.5 for 107275738	osa-u.5 for 4327993	osa-u.5 for 9270136	zma-u.5 for 100281701	zma-u.5 for 100280498	zma-u.5 for 103629384

Ortholog

Ortholog ID: 357

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CPN60B

Function^*

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

TCP-1/cpn60 chaperonin family protein

chaperonin 60 beta

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

chaperonin 60 subunit alpha 2, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic-like

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha

uncharacterized LOC103647277

ruBisCO large subunit-binding protein subunit beta, chloroplastic

ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like

ruBisCO large subunit-binding protein subunit alpha-like

chaperonin 60 subunit beta 4, chloroplastic

ruBisCO large subunit-binding protein subunit beta, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	4
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00620	Pyruvate metabolism	3
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath04141	Protein processing in endoplasmic reticulum	3
ath00970	Aminoacyl-tRNA biosynthesis	2
ath03040	Spliceosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	3
bra00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	4
bra03040	Spliceosome	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	6
bna00230	Purine metabolism	3
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	3
cit03020	RNA polymerase	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	5
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00061	Fatty acid biosynthesis	6
sly01212	Fatty acid metabolism	6
sly00620	Pyruvate metabolism	3
sly01200	Carbon metabolism	3
sly00780	Biotin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot00020	Citrate cycle (TCA cycle)	2
sot00270	Cysteine and methionine metabolism	2
sot00566	Sulfoquinovose metabolism	2
sot00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta00500	Starch and sucrose metabolism	2
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	6
nta04141	Protein processing in endoplasmic reticulum	5
nta00710	Carbon fixation by Calvin cycle	4
nta01200	Carbon metabolism	4
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	4
osa04626	Plant-pathogen interaction	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa03018	RNA degradation	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma03040	Spliceosome	2
zma04144	Endocytosis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae02010	ABC transporters	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	7
tae03010	Ribosome	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2
hvu03030	DNA replication	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2
hvu03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	4
sbi00730	Thiamine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4
sbi04626	Plant-pathogen interaction	3
sbi00620	Pyruvate metabolism	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi00970	Aminoacyl-tRNA biosynthesis	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

Expression

Expression pattern

Entrez Gene ID^*

25482039

25482040

100785937

100795157

18098223

7491161

832000

841996

103832584

103829780

100251252

100257653

107895043

107945220

106425605

106400776

102609990

102611539

101259035

101265242

102594819

102577751

107783939

107830331

4327993

9270136

103647277

103629384

123142923

543499

123452026

8054346

8066904

100837414

100842360

5726659

5717970

The preparation time of this page was 0.2 [sec].


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25482040 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25482040 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**