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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25488820   pentatricopeptide repeat-containing protein At5g61400 
 mtr-r.5   25488820   pentatricopeptide repeat-containing protein At5g61400 
 ath-u.5   AT5G61400   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103837380   pentatricopeptide repeat-containing protein At5g61400 
 vvi-u.5   100853899   pentatricopeptide repeat-containing protein At5g61400 
 ghi-r.1   107949813   pentatricopeptide repeat-containing protein At5g61400 
 ghi-r.1   107886149   pentatricopeptide repeat-containing protein At5g61400 
 bna-r.1   106382205   pentatricopeptide repeat-containing protein At5g61400 
 bna-r.1   125577743   pentatricopeptide repeat-containing protein At5g61400-like 
 cit-r.1   107176758   pentatricopeptide repeat-containing protein At5g61400 
 sly-u.5   101258868   pentatricopeptide repeat-containing protein At5g61400 
 sot-r.1   102582664   pentatricopeptide repeat-containing protein At5g61400-like 
 nta-r.1   107765663   uncharacterized LOC107765663 
 osa-u.5   4347068   pentatricopeptide repeat-containing protein At5g61400 
 tae-r.2   123121679   pentatricopeptide repeat-containing protein At5g61400 
 tae-r.2   123112137   pentatricopeptide repeat-containing protein At5g61400 
 hvu-r.1   123398337   pentatricopeptide repeat-containing protein At5g61400-like 
 bdi-r.1   100822783   pentatricopeptide repeat-containing protein At5g61400 

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Top 50 coexpressed genes to 25488820 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25488820 (mtr-u.5 coexpression data)

CoexMap"25488820"


mtrLOC25488820 | Entrez gene ID : 25488820      
Species mtr ath bra vvi ghi bna cit sly sot nta osa tae hvu bdi gma zma cre ppo sbi
Paralog 2 1 1 1 2 2 1 1 1 1 1 2 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (294 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_013459422.1 [sequence] [blastp]
XP_024635140.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for XP_013459422.1)
chlo 9,  chlo_mito 5  (predict for XP_024635140.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_013459422.1)
chlo 3  (predict for XP_024635140.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25488820
mtr-r.5
for
25488820
ath-u.5
for
AT5G61400
bra-r.6
for
103837380
vvi-u.5
for
100853899
ghi-r.1
for
107949813
ghi-r.1
for
107886149
bna-r.1
for
106382205
bna-r.1
for
125577743
cit-r.1
for
107176758
sly-u.5
for
101258868
sot-r.1
for
102582664
nta-r.1
for
107765663
osa-u.5
for
4347068
tae-r.2
for
123121679
tae-r.2
for
123112137
hvu-r.1
for
123398337
bdi-r.1
for
100822783


Ortholog ID: 12479
Species mtr ath bra vvi ghi ghi bna bna cit sly sot nta osa tae tae hvu bdi
Symbol LOC25488820 AT5G61400 LOC103837380 LOC100853899 LOC107949813 LOC107886149 LOC106382205 LOC125577743 LOC107176758 LOC101258868 LOC102582664 LOC107765663 LOC4347068 LOC123121679 LOC123112137 LOC123398337 LOC100822783
Function* pentatricopeptide repeat-containing protein At5g61400 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400-like pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400-like uncharacterized LOC107765663 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400 pentatricopeptide repeat-containing protein At5g61400-like pentatricopeptide repeat-containing protein At5g61400
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25488820 836261 103837380 100853899 107949813 107886149 106382205 125577743 107176758 101258868 102582664 107765663 4347068 123121679 123112137 123398337 100822783
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