ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	25496212	PXMP2/4 family protein 4
mtr-r.5	25496212	PXMP2/4 family protein 4
mtr-u.5	25485355	PXMP2/4 family protein 4
gma-u.5	100810534	PXMP2/4 family protein 4-like
gma-u.5	100816797	PXMP2/4 family protein 4
ppo-u.5	7478647	uncharacterized LOC7478647
ath-u.5	AT2G14860	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
ath-u.5	AT4G33905	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
ath-u.5	AT5G43140	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
bra-r.6	103847978	protein SYM1
bra-r.6	103827991	protein SYM1
bra-r.6	103847981	PXMP2/4 family protein 4
vvi-u.5	100247188	uncharacterized LOC100247188
vvi-u.5	100241306	uncharacterized LOC100241306
ghi-r.1	107894315	PXMP2/4 family protein 4
ghi-r.1	107905630	PXMP2/4 family protein 4
ghi-r.1	107921575	uncharacterized LOC107921575
bna-r.1	106352491	protein SYM1
bna-r.1	111214336	PXMP2/4 family protein 4
cit-r.1	102620250	uncharacterized LOC102620250
cit-r.1	102614287	uncharacterized LOC102614287
sly-u.5	101243643	uncharacterized LOC101243643
sly-u.5	101257154	protein SYM1
sly-u.5	101261915	protein SYM1-like
sot-r.1	102588974	protein SYM1-like
sot-r.1	102591541	PXMP2/4 family protein 4
nta-r.1	107821138	protein SYM1
osa-u.5	4352306	uncharacterized LOC4352306
zma-u.5	100274053	uncharacterized LOC100274053
tae-r.2	123102737	PXMP2/4 family protein 3
tae-r.2	123119899	PXMP2/4 family protein 3
tae-r.2	123110882	PXMP2/4 family protein 3
hvu-r.1	123395202	PXMP2/4 family protein 3-like
sbi-r.1	8067193	PXMP2/4 family protein 4
bdi-r.1	100821231	PXMP2/4 family protein 4

Top 50 coexpressed genes to 25496212 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 25496212 (mtr-u.5 coexpression data)

CoexMap"25496212"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr04146 [list] [network] Peroxisome (90 genes)

GO BP

GO CC

GO:0016020 [list] [network] membrane	(3455 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4514 genes)	IEA

GO MF

Protein

XP_024641367.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo_mito 4, cyto_mito 3, chlo 2, nucl 2

(predict for XP_024641367.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_024641367.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25496212	mtr-r.5 for 25496212	mtr-u.5 for 25485355	gma-u.5 for 100810534	gma-u.5 for 100816797	ppo-u.5 for 7478647	ath-u.5 for AT2G14860	ath-u.5 for AT4G33905	ath-u.5 for AT5G43140	bra-r.6 for 103847978	bra-r.6 for 103827991	bra-r.6 for 103847981	vvi-u.5 for 100247188	vvi-u.5 for 100241306	ghi-r.1 for 107894315	ghi-r.1 for 107905630	ghi-r.1 for 107921575	bna-r.1 for 106352491	bna-r.1 for 111214336	cit-r.1 for 102620250	cit-r.1 for 102614287	sly-u.5 for 101243643	sly-u.5 for 101257154	sly-u.5 for 101261915	sot-r.1 for 102588974	sot-r.1 for 102591541	nta-r.1 for 107821138	osa-u.5 for 4352306	zma-u.5 for 100274053	tae-r.2 for 123102737	tae-r.2 for 123119899	tae-r.2 for 123110882	hvu-r.1 for 123395202	sbi-r.1 for 8067193	bdi-r.1 for 100821231

Ortholog

Ortholog ID: 2696

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

PXMP2/4 family protein 4

PXMP2/4 family protein 4-like

PXMP2/4 family protein 4

uncharacterized LOC7478647

Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

protein SYM1

PXMP2/4 family protein 4

uncharacterized LOC100247188

uncharacterized LOC100241306

PXMP2/4 family protein 4

uncharacterized LOC102620250

uncharacterized LOC102614287

protein SYM1

protein SYM1-like

PXMP2/4 family protein 4

protein SYM1

uncharacterized LOC4352306

uncharacterized LOC100274053

PXMP2/4 family protein 3

PXMP2/4 family protein 3-like

PXMP2/4 family protein 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma04146	Peroxisome	2
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma04146	Peroxisome	2
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	6
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2
ath04145	Phagosome	2
ath04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	3
bra00260	Glycine, serine and threonine metabolism	2
bra00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi04814	Motor proteins	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi04814	Motor proteins	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	6
bna04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna02010	ABC transporters	2
bna04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna02010	ABC transporters	2
bna04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	3
cit01210	2-Oxocarboxylic acid metabolism	2
cit00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00730	Thiamine metabolism	2
cit01240	Biosynthesis of cofactors	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	5
sly00010	Glycolysis / Gluconeogenesis	2
sly00051	Fructose and mannose metabolism	2
sly00052	Galactose metabolism	2
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	9
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4
bdi00230	Purine metabolism	2
bdi01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

25496212

25485355

100810534

100816797

7478647

815975

829534

834331

103847978

103827991

103862272

100247188

100241306

107894315

107905630

107960734

111214336

106410502

106410503

102620250

102614287

101257154

101261915

102588974

102591541

107821138

4352306

100274053

123102737

123119899

123110882

123395202

8067193

100821231

The preparation time of this page was 0.2 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	1	3	3	2	3	2	2	3	2	1	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25496212 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25496212 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**