ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	25498270	probable carboxylesterase 12
mtr-r.5	25498270	probable carboxylesterase 12
mtr-u.5	11441408	probable carboxylesterase 12
mtr-u.5	11425594	2-hydroxyisoflavanone dehydratase
mtr-u.5	11413175	2-hydroxyisoflavanone dehydratase
gma-u.5	111043202	alpha/beta-hydrolases superfamily protein
gma-u.5	100801816	probable carboxylesterase 12
gma-u.5	100806608	probable carboxylesterase 12
ppo-u.5	18102117	probable carboxylesterase 7
ppo-u.5	18102116	2-hydroxyisoflavanone dehydratase
ath-u.5	AT1G47480	alpha/beta-Hydrolases superfamily protein
ath-u.5	CXE5	carboxyesterase 5
ath-u.5	AT1G49650	alpha/beta-Hydrolases superfamily protein
bra-r.6	103873520	probable carboxylesterase 12
bra-r.6	103874808	probable carboxylesterase 12
bra-r.6	103875402	probable carboxylesterase 7
vvi-u.5	100267581	probable carboxylesterase 2
vvi-u.5	104879249	2-hydroxyisoflavanone dehydratase
vvi-u.5	100243547	probable carboxylesterase 12
ghi-r.1	121225476	probable carboxylesterase 12
ghi-r.1	107905552	probable carboxylesterase 2
ghi-r.1	107905554	probable carboxylesterase 2
bna-r.1	106397887	probable carboxylesterase 1
bna-r.1	106396569	probable carboxylesterase 7
bna-r.1	106376580	probable carboxylesterase 13
sly-u.5	ASH1	acylsugar acylhydrolase 1
sly-u.5	101255487	2-hydroxyisoflavanone dehydratase-like
sly-u.5	101255920	2-hydroxyisoflavanone dehydratase-like
sot-r.1	102580493	probable carboxylesterase 7
sot-r.1	102578867	probable carboxylesterase 12
sot-r.1	102579197	probable carboxylesterase 7
nta-r.1	107809294	putative carboxylesterase 12
osa-u.5	4347286	tuliposide A-converting enzyme 1, chloroplastic
osa-u.5	4345820	probable carboxylesterase 12
osa-u.5	4345825	probable carboxylesterase 12
zma-u.5	100382162	uncharacterized LOC100382162
zma-u.5	100273481	gibberellin receptor GID1L2
zma-u.5	100272907	gibberellin receptor GID1L2
tae-r.2	123103991	probable carboxylesterase 2
tae-r.2	123103995	2-hydroxyisoflavanone dehydratase
hvu-r.1	123402288	tuliposide A-converting enzyme 1, chloroplastic-like
hvu-r.1	123395834	tuliposide A-converting enzyme 1, chloroplastic-like
sbi-r.1	110431222	tuliposide A-converting enzyme 1, chloroplastic-like
sbi-r.1	8066359	2-hydroxyisoflavanone dehydratase
sbi-r.1	8083552	probable carboxylesterase 2
bdi-r.1	104584687	probable carboxylesterase 12
bdi-r.1	104581613	probable carboxylesterase 12
bdi-r.1	100831872	tuliposide A-converting enzyme 1, chloroplastic

Top 50 coexpressed genes to 25498270 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 25498270 (mtr-u.5 coexpression data)

CoexMap"25498270"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0016787 [list] [network] hydrolase activity

(3518 genes)

IEA

Protein

XP_013448609.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, vacu 3, nucl 1, cyto 1, extr 1, cyto_nucl 1

(predict for XP_013448609.1)

Subcellular
localization
TargetP

chlo 2

(predict for XP_013448609.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25498270	mtr-r.5 for 25498270	mtr-u.5 for 11441408	mtr-u.5 for 11425594	mtr-u.5 for 11413175	gma-u.5 for 111043202	gma-u.5 for 100801816	gma-u.5 for 100806608	ppo-u.5 for 18102117	ppo-u.5 for 18102116	ath-u.5 for AT1G47480	ath-u.5 for CXE5	ath-u.5 for AT1G49650	bra-r.6 for 103873520	bra-r.6 for 103874808	bra-r.6 for 103875402	vvi-u.5 for 100267581	vvi-u.5 for 104879249	vvi-u.5 for 100243547	ghi-r.1 for 121225476	ghi-r.1 for 107905552	ghi-r.1 for 107905554	bna-r.1 for 106397887	bna-r.1 for 106396569	bna-r.1 for 106376580	sly-u.5 for ASH1	sly-u.5 for 101255487	sly-u.5 for 101255920	sot-r.1 for 102580493	sot-r.1 for 102578867	sot-r.1 for 102579197	nta-r.1 for 107809294	osa-u.5 for 4347286	osa-u.5 for 4345820	osa-u.5 for 4345825	zma-u.5 for 100382162	zma-u.5 for 100273481	zma-u.5 for 100272907	tae-r.2 for 123103991	tae-r.2 for 123103995	hvu-r.1 for 123402288	hvu-r.1 for 123395834	sbi-r.1 for 110431222	sbi-r.1 for 8066359	sbi-r.1 for 8083552	bdi-r.1 for 104584687	bdi-r.1 for 104581613	bdi-r.1 for 100831872

Ortholog

Ortholog ID: 53

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

bdi

Symbol

ASH1

Function^*

probable carboxylesterase 12

2-hydroxyisoflavanone dehydratase

probable carboxylesterase 12

probable carboxylesterase 2

2-hydroxyisoflavanone dehydratase

probable carboxylesterase 7

probable carboxylesterase 2

alpha/beta-Hydrolases superfamily protein

probable carboxylesterase 7

probable carboxylesterase 4, mitochondrial

probable carboxylesterase 12

probable carboxylesterase 2

uncharacterized LOC100247056

probable carboxylesterase 12

probable carboxylesterase 2

probable carboxylesterase 12

probable carboxylesterase 3

probable carboxylesterase 12

2-hydroxyisoflavanone dehydratase-like

probable carboxylesterase 5

acylsugar acylhydrolase 1

2-hydroxyisoflavanone dehydratase-like

probable carboxylesterase 13

probable carboxylesterase 7

2-hydroxyisoflavanone dehydratase-like

putative carboxylesterase 12

putative carboxylesterase 2

uncharacterized LOC107787780

2-hydroxyisoflavanone dehydratase

tuliposide A-converting enzyme b1, amyloplastic

probable carboxylesterase 7

gibberellin receptor GID1L2

probable carboxylesterase 2

tuliposide A-converting enzyme 1, chloroplastic

probable carboxylesterase 2

2-hydroxyisoflavanone dehydratase

tuliposide A-converting enzyme 1, chloroplastic

tuliposide A-converting enzyme 1, chloroplastic-like

probable carboxylesterase 12

probable carboxylesterase 7

probable carboxylesterase 12

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	2
mtr00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr02010	ABC transporters	3
mtr04981	Folate transport and metabolism	3
mtr00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	5
gma01200	Carbon metabolism	5
gma01230	Biosynthesis of amino acids	5
gma00910	Nitrogen metabolism	2
gma00943	Isoflavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	4
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	3
gma04141	Protein processing in endoplasmic reticulum	3
gma04145	Phagosome	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2
ppo00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	5
ppo00941	Flavonoid biosynthesis	3
ppo00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
ppo00270	Cysteine and methionine metabolism	2
ppo00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	5
ath04981	Folate transport and metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	3
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00944	Flavone and flavonol biosynthesis	2
bna00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot04144	Endocytosis	2
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot00565	Ether lipid metabolism	2
sot04144	Endocytosis	2
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta00450	Selenocompound metabolism	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta00073	Cutin, suberine and wax biosynthesis	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	2
osa00020	Citrate cycle (TCA cycle)	2
osa00620	Pyruvate metabolism	2
osa00785	Lipoic acid metabolism	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	4
osa00710	Carbon fixation by Calvin cycle	3
osa01200	Carbon metabolism	3
osa00030	Pentose phosphate pathway	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	5
zma00710	Carbon fixation by Calvin cycle	4
zma01200	Carbon metabolism	4
zma00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04146	Peroxisome	3
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00710	Carbon fixation by Calvin cycle	2
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	3
hvu01230	Biosynthesis of amino acids	3
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	2
bdi00970	Aminoacyl-tRNA biosynthesis	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

11441408

11425594

11437326

100801816

100815625

100785409

18102113

18104922

838502

814884

103875402

103832917

103874818

100245277

100247056

100262425

121225476

107905552

107942661

106374693

111212352

106405942

102610217

102631253

101253900

101256216

101248522

102580493

102579519

107809294

107776023

107787780

4347254

4347255

9270290

100272907

103647489

103647491

123104002

123116288

123116290

123402288

123452691

100823821

100823346

100832052

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Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	cit
Paralog	5	3	2	3	3	3	3	3	3	3	1	3	3	2	2	3	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25498270 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25498270 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**