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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25499129   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 
 mtr-r.5   25499129   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 
 mtr-u.5   120577498   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 
 mtr-u.5   112419119   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 
 mtr-u.5   120580139   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 
 gma-u.5   100815173   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 
 gma-u.5   100807162   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 
 gma-u.5   100791029   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 
 ppo-u.5   7481418   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 
 ppo-u.5   7455416   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 
 ppo-u.5   18105486   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 
 ath-u.5   MEE29   helicase domain-containing protein 
 ath-u.5   ESP3   RNA helicase family protein 
 ath-u.5   AT1G26370   RNA helicase family protein 
 vvi-u.5   100262984   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 
 vvi-u.5   100257193   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 
 vvi-u.5   100244993   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 
 sly-u.5   101267328   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 
 sly-u.5   101266273   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 
 sly-u.5   101265161   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 
 osa-u.5   4329095   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 
 osa-u.5   4345304   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 
 zma-u.5   100281385   ATP-dependent RNA helicase DHX8 
 zma-u.5   100282531   pre-mRNA-splicing factor ATP-dependent RNA helicase 
 zma-u.5   100383864   uncharacterized LOC100383864 

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Top 50 coexpressed genes to 25499129 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25499129 (mtr-u.5 coexpression data)

CoexMap"25499129"


mtrLOC25499129 | Entrez gene ID : 25499129      
Species mtr gma ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03040 [list] [network] Spliceosome (435 genes)
GO BP
GO:0045943 [list] [network] positive regulation of transcription by RNA polymerase I  (6 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (210 genes)  IEA  
GO:0005622 [list] [network] intracellular anatomical structure  (7440 genes)  IEA  
GO MF
GO:0003725 [list] [network] double-stranded RNA binding  (15 genes)  IEA  
GO:0004386 [list] [network] helicase activity  (233 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2502 genes)  IEA  
Protein XP_013449748.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  mito 2,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_013449748.2)
Subcellular
localization
TargetP
mito 7,  chlo 3  (predict for XP_013449748.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25499129

.
mtr-r.5
for
25499129

.
mtr-u.5
for
120577498

.
mtr-u.5
for
112419119

.
mtr-u.5
for
120580139

.
gma-u.5
for
100815173

.
gma-u.5
for
100807162

.
gma-u.5
for
100791029

.
ppo-u.5
for
7481418

.
ppo-u.5
for
7455416

.
ppo-u.5
for
18105486

.
ath-u.5
for
MEE29

.
ath-u.5
for
ESP3

.
ath-u.5
for
AT1G26370

.
vvi-u.5
for
100262984

.
vvi-u.5
for
100257193

.
vvi-u.5
for
100244993

.
sly-u.5
for
101267328

.
sly-u.5
for
101266273

.
sly-u.5
for
101265161

.
osa-u.5
for
4329095

.
osa-u.5
for
4345304

.
zma-u.5
for
100281385

.
zma-u.5
for
100282531

.
zma-u.5
for
100383864

.


Ortholog ID: 280
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT1G26370 AT3G62310 LOC100790809 LOC100781090 LOC101265161 LOC101253458 LOC4332645 LOC100281385 LOC103649589 LOC103842049 LOC103856434 LOC100244993 LOC100262984 LOC7485208 LOC18105660 LOC11407634 LOC25488674 LOC123054340 LOC123150349 LOC123448425 LOC107930383 LOC107946014 LOC106389248 LOC106357504 CHLRE_07g349100v5 CHLRE_11g467654v5 LOC8064256 LOC8083713 LOC102602289 LOC102590563 LOC102623010 LOC102618425 LOC100835841 LOC100824836 LOC107768863 LOC107817775
Function* RNA helicase family protein RNA helicase family protein probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 ATP-dependent RNA helicase DHX8 ATP-dependent RNA helicase probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 uncharacterized protein uncharacterized protein pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 putative ATP-dependent RNA helicase DHX33 probable pre-mRNA-splicing factor ATP-dependent RNA helicase probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 4
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma04120 Ubiquitin mediated proteolysis 3
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03050 Proteasome 2
zma03013 Nucleocytoplasmic transport 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03082 ATP-dependent chromatin remodeling 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 3
vvi04144 Endocytosis 3
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04016 MAPK signaling pathway - plant 3
tae04075 Plant hormone signal transduction 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu00020 Citrate cycle (TCA cycle) 2
hvu00785 Lipoic acid metabolism 2
hvu01200 Carbon metabolism 2
hvu01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 3
bna00300 Lysine biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03018 RNA degradation 3
sbi03013 Nucleocytoplasmic transport 3
sbi03015 mRNA surveillance pathway 3
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot04120 Ubiquitin mediated proteolysis 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 10
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839179 825404 100790809 100781090 101265161 101253458 4332645 100281385 103649589 103842049 103856434 100244993 100262984 7485208 18105660 11407634 25488674 123054340 123150349 123448425 107930383 107946014 106389248 106357504 66054192 5724309 8064256 8083713 102602289 102590563 102623010 102618425 100835841 100824836 107768863 107817775
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