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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25493640   agamous-like MADS-box protein AGL19 
 mtr-u.5   11432102   MADS-box protein SOC1 
 gma-u.5   100782713   agamous-like MADS-box protein AGL19 
 gma-u.5   100805260   agamous-like MADS-box protein AGL19-like 
 ppo-u.5   7482155   MADS-box protein AGL42 
 ppo-u.5   7488925   MADS-box protein SOC1 
 ppo-u.5   7494028   MADS-box protein SOC1 
 ath-u.5   AGL42   AGAMOUS-like 42 
 bra-r.6   103839919   agamous-like MADS-box protein AGL14 
 bra-r.6   103866913   MADS-box protein SOC1 
 vvi-u.5   100268115   MADS-box protein AGL42 
 vvi-u.5   100252657   MADS-box transcription factor 15 
 vvi-u.5   100246102   agamous-like MADS-box protein AGL19 
 ghi-r.1   107911933   MADS-box protein SOC1 
 ghi-r.1   107912078   truncated transcription factor CAULIFLOWER A 
 ghi-r.1   121203426   MADS-box protein SOC1 
 bna-r.1   106440467   agamous-like MADS-box protein AGL19 
 bna-r.1   106374375   agamous-like MADS-box protein AGL19 
 cit-r.1   102619676   truncated transcription factor CAULIFLOWER A-like 
 cit-r.1   102626103   agamous-like MADS-box protein AGL19 
 cit-r.1   102577939   SOC1-like protein 1 
 sly-u.5   101244491   MADS-box protein AGL42-like 
 sly-u.5   101250432   agamous-like MADS-box protein AGL19 
 sot-r.1   102586019   MADS-box protein SOC1-like 
 sot-r.1   107058273   MADS-box protein SOC1-like 
 sot-r.1   102603784   MADS-box protein SOC1-like 
 nta-r.1   107813303   MADS-box protein SOC1 
 nta-r.1   107828738   MADS-box protein SOC1 
 nta-r.1   107821034   MADS-box protein SOC1-like 
 osa-u.5   4349237   MADS-box transcription factor 56-like 
 osa-u.5   4331445   MADS-box transcription factor 50-like 
 osa-u.5   4327247   MADS-box transcription factor 51-like 
 zma-u.5   100382583   uncharacterized LOC100382583 
 zma-u.5   100272251   uncharacterized LOC100272251 
 zma-u.5   103649797   MADS-box transcription factor 51 
 tae-r.2   123105975   MADS-box transcription factor 51 
 tae-r.2   123093801   MADS-box transcription factor 51 
 hvu-r.1   123445264   MADS-box transcription factor 51-like 
 hvu-r.1   123445266   MADS-box transcription factor 51-like 
 hvu-r.1   123445268   MADS-box transcription factor 51-like 
 sbi-r.1   8085162   MADS-box protein SOC1 
 sbi-r.1   8077968   MADS-box transcription factor 50 
 sbi-r.1   8060808   MADS-box transcription factor 51 
 bdi-r.1   100826117   MADS-box transcription factor 51 
 bdi-r.1   100841167   MADS-box transcription factor 50-like 
 bdi-r.1   100825614   MADS-box protein SOC1 
 cre-r.1   CHLRE_11g467577v5   uncharacterized protein 

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Top 50 coexpressed genes to 25493640 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25493640 (mtr-u.5 coexpression data)

CoexMap"25500991"


mtrLOC25500991 | Entrez gene ID : 25500991      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 3 1 2 3 3 2 3 2 3 3 3 3 2 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (161 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (259 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (607 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1100 genes)  IEA  
Protein XP_013444986.2 [sequence] [blastp]
XP_024627833.1 [sequence] [blastp]
XP_024627834.1 [sequence] [blastp]
XP_024627835.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3  (predict for XP_013444986.2)
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3  (predict for XP_024627833.1)
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3  (predict for XP_024627834.1)
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3  (predict for XP_024627835.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_013444986.2)
other 6,  mito 3  (predict for XP_024627833.1)
other 6,  mito 3  (predict for XP_024627834.1)
other 6,  mito 3  (predict for XP_024627835.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25493640
mtr-u.5
for
11432102
gma-u.5
for
100782713
gma-u.5
for
100805260
ppo-u.5
for
7482155
ppo-u.5
for
7488925
ppo-u.5
for
7494028
ath-u.5
for
AGL42
bra-r.6
for
103839919
bra-r.6
for
103866913
vvi-u.5
for
100268115
vvi-u.5
for
100252657
vvi-u.5
for
100246102
ghi-r.1
for
107911933
ghi-r.1
for
107912078
ghi-r.1
for
121203426
bna-r.1
for
106440467
bna-r.1
for
106374375
cit-r.1
for
102619676
cit-r.1
for
102626103
cit-r.1
for
102577939
sly-u.5
for
101244491
sly-u.5
for
101250432
sot-r.1
for
102586019
sot-r.1
for
107058273
sot-r.1
for
102603784
nta-r.1
for
107813303
nta-r.1
for
107828738
nta-r.1
for
107821034
osa-u.5
for
4349237
osa-u.5
for
4331445
osa-u.5
for
4327247
zma-u.5
for
100382583
zma-u.5
for
100272251
zma-u.5
for
103649797
tae-r.2
for
123105975
tae-r.2
for
123093801
hvu-r.1
for
123445264
hvu-r.1
for
123445266
hvu-r.1
for
123445268
sbi-r.1
for
8085162
sbi-r.1
for
8077968
sbi-r.1
for
8060808
bdi-r.1
for
100826117
bdi-r.1
for
100841167
bdi-r.1
for
100825614
cre-r.1
for
CHLRE_11g467577v5


Ortholog ID: 245
Species mtr gma gma gma ppo ppo ppo ath bra vvi vvi vvi ghi ghi ghi bna bna cit cit cit sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC25500990 LOC100816440 LOC100784678 LOC100807963 LOC7482155 LOC7494028 LOC18094432 AGL14 SOC1 LOC100268115 LOC100246102 MADS8 LOC107963688 LOC107908954 LOC107957281 LOC106440467 LOC106389254 LOC102619676 LOC102577939 LOC102577938 LOC101244491 FYFL LOC544075 LOC107058273 LOC102603784 LOC102601314 LOC107828738 LOC107816198 LOC107776514 LOC4349237 LOC4327247 LOC107276190 LOC103649797 LOC541985 LOC100279630 LOC123051047 LOC123093767 LOC100125729 LOC123445264 LOC123445266 LOC8077968 LOC8060808 LOC110431745 LOC100826117 LOC100825614 LOC100824579 CHLRE_11g467577v5
Function* MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein AGL42 MADS-box protein SOC1 agamous-like MADS-box protein AGL19 AGAMOUS-like 14 MADS-box protein SOC1-like MADS-box protein AGL42 agamous-like MADS-box protein AGL19 MADS-box protein agamous-like MADS-box protein AGL19 MADS-box protein SOC1 MADS-box protein SOC1-like agamous-like MADS-box protein AGL19 MADS-box protein AGL42 truncated transcription factor CAULIFLOWER A-like SOC1-like protein 1 SOC1-like protein 2 MADS-box protein AGL42-like MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box transcription factor 56-like MADS-box transcription factor 51-like MADS-box protein SOC1 MADS-box transcription factor 51 MADS14 uncharacterized LOC100279630 MADS-box transcription factor 56 MADS-box transcription factor 50 MADS-box transcription factor 50 MADS-box transcription factor 51-like MADS-box transcription factor 51-like MADS-box transcription factor 50 MADS-box transcription factor 51 MADS-box transcription factor 56-like MADS-box transcription factor 51 MADS-box protein SOC1 agamous-like MADS-box protein AGL14-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04016 MAPK signaling pathway - plant 2
vvi00910 Nitrogen metabolism 2
vvi01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 5
sbi04075 Plant hormone signal transduction 5
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25500990 100816440 100784678 100807963 7482155 7494028 18094432 826795 103858179 100268115 100246102 100232995 107963688 107908954 107957281 106440467 106389254 102619676 102577939 102577938 101244491 101266695 544075 107058273 102603784 102601314 107828738 107816198 107776514 4349237 4327247 107276190 103649797 541985 100279630 123051047 123093767 100125729 123445264 123445266 8077968 8060808 110431745 100826117 100825614 100824579 5726939
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