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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PAM68   PAM68-like protein (DUF3464) 
 ath-r.7   PAM68   PAM68-like protein (DUF3464) 
 ath-m.9   PAM68   PAM68-like protein (DUF3464) 
 ath-e.2   PAM68   PAM68-like protein (DUF3464) 
 ath-m.4.bio   PAM68   PAM68-like protein (DUF3464) 
 ath-m.4.hor   PAM68   PAM68-like protein (DUF3464) 
 ath-m.4.lig   PAM68   PAM68-like protein (DUF3464) 
 ath-m.4.str   PAM68   PAM68-like protein (DUF3464) 
 ath-m.4.tis   PAM68   PAM68-like protein (DUF3464) 
 bra-r.6   103834099   protein PAM68, chloroplastic 
 bna-r.1   106360926   protein PAM68, chloroplastic 
 bna-r.1   106419728   protein PAM68, chloroplastic 
 bna-r.1   125577338   protein PAM68, chloroplastic-like 
 ghi-r.1   107900677   protein PAM68, chloroplastic 
 ghi-r.1   107929416   protein PAM68, chloroplastic 
 cit-r.1   102623704   protein PAM68, chloroplastic 
 gma-u.5   100810313   protein PAM68, chloroplastic 
 gma-u.5   102669201   protein PAM68, chloroplastic 
 gma-u.5   100809069   protein PAM68, chloroplastic 
 vvi-u.5   100253536   protein PAM68, chloroplastic-like 
 ppo-u.5   18094076   protein PAM68, chloroplastic 
 mtr-u.5   11412832   protein PAM68, chloroplastic 
 sly-u.5   101263392   protein PAM68, chloroplastic 
 sot-r.1   102590958   protein PAM68, chloroplastic 
 nta-r.1   107780161   protein PAM68, chloroplastic 
 nta-r.1   142169470   protein PAM68, chloroplastic-like 
 zma-u.5   103639583   protein PAM68, chloroplastic 
 tae-r.2   123084817   protein PAM68, chloroplastic 
 tae-r.2   123093266   protein PAM68, chloroplastic 
 tae-r.2   123098537   protein PAM68, chloroplastic 
 hvu-r.1   123447046   protein PAM68, chloroplastic 
 sbi-r.1   8082138   protein PAM68, chloroplastic 
 bdi-r.1   100831683   protein PAM68, chloroplastic 
 cre-r.1   CHLRE_07g329000v5   uncharacterized protein 

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Top 50 coexpressed genes to PAM68 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAM68 (ath-u.5 coexpression data)

CoexMap"2745715"


athPAM68 | Entrez gene ID : 2745715      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi cre osa
Paralog 9 1 3 2 1 3 1 1 1 1 1 2 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010207 [list] [network] photosystem II assembly  (27 genes)  IMP  
GO:0009642 [list] [network] response to light intensity  (168 genes)  IDA  
GO CC
GO:0009533 [list] [network] chloroplast stromal thylakoid  (11 genes)  IDA  
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001329651.1 [sequence] [blastp]
NP_974571.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  plas 2  (predict for NP_001329651.1)
plas 4,  nucl 2,  mito 1,  E.R. 1,  chlo 1,  extr 1,  cyto_mito 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for NP_974571.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001329651.1)
chlo 8  (predict for NP_974571.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PAM68
ath-r.7
for
PAM68
ath-m.9
for
PAM68
ath-e.2
for
PAM68
ath-m.4.bio
for
PAM68
ath-m.4.hor
for
PAM68
ath-m.4.lig
for
PAM68
ath-m.4.str
for
PAM68
ath-m.4.tis
for
PAM68
bra-r.6
for
103834099
bna-r.1
for
106360926
bna-r.1
for
106419728
bna-r.1
for
125577338
ghi-r.1
for
107900677
ghi-r.1
for
107929416
cit-r.1
for
102623704
gma-u.5
for
100810313
gma-u.5
for
102669201
gma-u.5
for
100809069
vvi-u.5
for
100253536
ppo-u.5
for
18094076
mtr-u.5
for
11412832
sly-u.5
for
101263392
sot-r.1
for
102590958
nta-r.1
for
107780161
nta-r.1
for
142169470
zma-u.5
for
103639583
tae-r.2
for
123084817
tae-r.2
for
123093266
tae-r.2
for
123098537
hvu-r.1
for
123447046
sbi-r.1
for
8082138
bdi-r.1
for
100831683
cre-r.1
for
CHLRE_07g329000v5


Ortholog ID: 9310
Species ath bra bna bna bna ghi ghi cit gma gma gma vvi ppo mtr sly sot nta nta zma tae tae tae hvu sbi bdi cre
Symbol PAM68 LOC103834099 LOC106360926 LOC106419728 LOC125577338 LOC107900677 LOC107929416 LOC102623704 LOC100810313 LOC102669201 LOC100809069 LOC100253536 LOC18094076 LOC11412832 LOC101263392 LOC102590958 LOC107780161 LOC142169470 LOC103639583 LOC123084817 LOC123093266 LOC123098537 LOC123447046 LOC8082138 LOC100831683 CHLRE_07g329000v5
Function* PAM68-like protein (DUF3464) protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic-like protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic-like protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic-like protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic protein PAM68, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 2745715 103834099 106360926 106419728 125577338 107900677 107929416 102623704 100810313 102669201 100809069 100253536 18094076 11412832 101263392 102590958 107780161 142169470 103639583 123084817 123093266 123098537 123447046 8082138 100831683 5716207
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