ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	ndhB	NADH dehydrogenase subunit 2
ghi-r.1	ndhB	NADH dehydrogenase subunit 2
ghi-r.1	121209823	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic-like
ghi-r.1	121228846	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
ath-u.5	ndhB	NADH dehydrogenase subunit 2
ath-u.5	ndhB	NADH dehydrogenase subunit 2
bna-r.1	ndhB	NADH dehydrogenase subunit 2
bna-r.1	ndhB	NADH dehydrogenase subunit 2
cit-r.1	ndhB	NADH dehydrogenase subunit 2
cit-r.1	ndhB	NADH dehydrogenase subunit 2
gma-u.5	ndhB	NADH dehydrogenase subunit 2
gma-u.5	ndhB	NADH dehydrogenase subunit 2
vvi-u.5	ndhB	NADH dehydrogenase subunit 2
vvi-u.5	ndhB	NADH dehydrogenase subunit 2
ppo-u.5	ndhB	NADH dehydrogenase subunit 2
ppo-u.5	ndhB	NADH dehydrogenase subunit 2
mtr-u.5	ndhB	NADH dehydrogenase subunit 2
mtr-u.5	120579656	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic-like
sly-u.5	ndhB	NADH-plastoquinone oxidoreductase subunit 2
sly-u.5	ndhB	NADH-plastoquinone oxidoreductase subunit 2
sot-r.1	ndhB	NADH dehydrogenase subunit 2
sot-r.1	ndhB	NADH dehydrogenase subunit 2
nta-r.1	orf101d	hypothetical protein
nta-r.1	ndhB	NADH dehydrogenase subunit 2
nta-r.1	ndhB	NADH dehydrogenase subunit 2
osa-u.5	ndhB	NADH dehydrogenase subunit 2
osa-u.5	ndhB	NADH dehydrogenase subunit 2
zma-u.5	ndhB	NADH dehydrogenase subunit 2
zma-u.5	ndhB	NADH dehydrogenase subunit 2
tae-r.2	123180806	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
hvu-r.1	123420609	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
hvu-r.1	123421239	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
hvu-r.1	123398097	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
sbi-r.1	ndhB	NADH dehydrogenase subunit 2
sbi-r.1	ndhB	NADH dehydrogenase subunit 2
bdi-r.1	ndhB	NADH dehydrogenase subunit 2
bdi-r.1	ndhB	NADH dehydrogenase subunit 2

Top 50 coexpressed genes to ndhB (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to ndhB (ghi-r.1 coexpression data)

CoexMap"3989219"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00190 [list] [network] Oxidative phosphorylation (393 genes)

GO BP

GO CC

GO MF

Protein

YP_538995.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, vacu 2, E.R._plas 2, mito_plas 2, cyto_plas 2

(predict for YP_538995.1)

Subcellular
localization
TargetP

other 7, scret 7

(predict for YP_538995.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for ndhB	ghi-r.1 for ndhB	ghi-r.1 for 121209823	ghi-r.1 for 121228846	ath-u.5 for ndhB	ath-u.5 for ndhB	bna-r.1 for ndhB	bna-r.1 for ndhB	cit-r.1 for ndhB	cit-r.1 for ndhB	gma-u.5 for ndhB	gma-u.5 for ndhB	vvi-u.5 for ndhB	vvi-u.5 for ndhB	ppo-u.5 for ndhB	ppo-u.5 for ndhB	mtr-u.5 for ndhB	mtr-u.5 for 120579656	sly-u.5 for ndhB	sly-u.5 for ndhB	sot-r.1 for ndhB	sot-r.1 for ndhB	nta-r.1 for orf101d	nta-r.1 for ndhB	nta-r.1 for ndhB	osa-u.5 for ndhB	osa-u.5 for ndhB	zma-u.5 for ndhB	zma-u.5 for ndhB	tae-r.2 for 123180806	hvu-r.1 for 123420609	hvu-r.1 for 123421239	hvu-r.1 for 123398097	sbi-r.1 for ndhB	sbi-r.1 for ndhB	bdi-r.1 for ndhB	bdi-r.1 for ndhB

Ortholog

Ortholog ID: 1598

Species

ghi

ath

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ndhB

LOC121228846

LOC121229164

ndhB

LOC120579656

ndhB

orf101d

ndhB

LOC123180806

LOC123422468

ndhB

Function^*

NADH dehydrogenase subunit 2

NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic

NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic-like

NADH dehydrogenase subunit 2

NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic-like

NADH-plastoquinone oxidoreductase subunit 2

NADH dehydrogenase subunit 2

hypothetical protein

NADH dehydrogenase subunit 2

NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic

NADH dehydrogenase subunit 2

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	3
ghi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	9
ath03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	8
ath03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	8
bna00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9
bna00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	8
gma03010	Ribosome	8
gma00195	Photosynthesis	3
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	9
gma03010	Ribosome	8
gma03020	RNA polymerase	2
gma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	14
vvi00195	Photosynthesis	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	10
vvi00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	10
ppo03010	Ribosome	4
ppo03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	8
ppo03020	RNA polymerase	5
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	5
mtr00195	Photosynthesis	4
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	5
mtr00190	Oxidative phosphorylation	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	9
sly00190	Oxidative phosphorylation	8
sly00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	10
sly00195	Photosynthesis	8
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	8
sot03010	Ribosome	7
sot00195	Photosynthesis	4
sot00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	7
sot03010	Ribosome	7
sot00970	Aminoacyl-tRNA biosynthesis	3
sot00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	9
nta00195	Photosynthesis	6
nta03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	9
nta00195	Photosynthesis	6
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	8
nta03010	Ribosome	6
nta00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	11
osa03010	Ribosome	4
osa00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	11
osa03010	Ribosome	5
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	9
zma00195	Photosynthesis	7
zma03020	RNA polymerase	6
zma03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	9
zma00190	Oxidative phosphorylation	8
zma00195	Photosynthesis	6
zma03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	12
hvu03010	Ribosome	6
hvu00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	10
sbi00190	Oxidative phosphorylation	8
sbi03010	Ribosome	3
sbi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	9
sbi00195	Photosynthesis	8
sbi03020	RNA polymerase	5
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	7
bdi03010	Ribosome	6
bdi00970	Aminoacyl-tRNA biosynthesis	2
bdi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	7
bdi03010	Ribosome	6
bdi00195	Photosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

3989173

121228846

121229164

4042815

844713

11542106

11542035

4271162

4271170

3989377

3989342

4025014

4025030

4929763

4929721

5333121

120579656

3950469

3950395

4099922

4099891

3205192

800509

800511

3131397

3131396

845181

845180

123180806

123422468

4549098

4549188

6439822

6439820

The preparation time of this page was 0.2 [sec].


Species	ghi	ath	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	bra	cre
Paralog	4	2	2	2	2	2	2	2	2	2	3	2	2	1	3	2	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ndhB (ghi-r.1 coexpression data)

Top 50 enrichment test to ndhB (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**