ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4329152	coatomer subunit zeta-2-like
osa-r.6	4329152	coatomer subunit zeta-2-like
osa-m.8	4329152	coatomer subunit zeta-2-like
osa-e.1	4329152	coatomer subunit zeta-2-like
osa-u.5	4327378	coatomer subunit zeta-3-like
osa-u.5	4339020	coatomer subunit zeta-1-like
zma-u.5	542595	Coatomer subunit zeta-1
zma-u.5	541628	Coatomer subunit zeta-2
ath-u.5	AT4G08520	SNARE-like superfamily protein
ath-u.5	AT3G09800	SNARE-like superfamily protein
gma-u.5	COPZ2	nonclathrin coat protein zeta2-COP
gma-u.5	100775726	coatomer subunit zeta-1
sly-u.5	copz2	nonclathrin coat protein zeta2-COP
sly-u.5	copz1	nonclathrin coat protein zeta1-COP
sly-u.5	101262981	coatomer subunit zeta-2
vvi-u.5	100260697	coatomer subunit zeta-1
vvi-u.5	100260064	coatomer subunit zeta-1
ppo-u.5	18096792	coatomer subunit zeta-1
ppo-u.5	18094824	coatomer subunit zeta-2
ppo-u.5	18095292	coatomer subunit zeta-1
mtr-u.5	120576909	coatomer subunit zeta-3
mtr-u.5	11426596	coatomer subunit zeta-1
mtr-u.5	25500499	coatomer subunit zeta-3

Top 50 coexpressed genes to 4329152 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4329152 (osa-u.5 coexpression data)

CoexMap"4329152"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(30 genes)	IEA
GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(41 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(271 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(21 genes)

IEA

GO MF

Protein

NP_001403506.1 [sequence] [blastp]
XP_015623149.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 4, nucl 1, plas 1, nucl_plas 1	(predict for NP_001403506.1)
cyto 5, chlo 4, nucl 1, plas 1, nucl_plas 1	(predict for XP_015623149.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001403506.1)
other 7	(predict for XP_015623149.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4329152	osa-r.6 for 4329152	osa-m.8 for 4329152	osa-e.1 for 4329152	osa-u.5 for 4327378	osa-u.5 for 4339020	zma-u.5 for 542595	zma-u.5 for 541628	ath-u.5 for AT4G08520	ath-u.5 for AT3G09800	gma-u.5 for COPZ2	gma-u.5 for 100775726	sly-u.5 for copz2	sly-u.5 for copz1	sly-u.5 for 101262981	vvi-u.5 for 100260697	vvi-u.5 for 100260064	ppo-u.5 for 18096792	ppo-u.5 for 18094824	ppo-u.5 for 18095292	mtr-u.5 for 120576909	mtr-u.5 for 11426596	mtr-u.5 for 25500499

Ortholog

Ortholog ID: 1575

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

copz1

copz2

Function^*

coatomer subunit zeta-1-like

coatomer subunit zeta-2-like

coatomer subunit zeta-1

coatomer subunit zeta-3

coatomer subunit zeta-2

coatomer subunit zeta-1

coatomer subunit zeta-3

coatomer subunit zeta-2

Coatomer subunit zeta-1

Coatomer subunit zeta-2

coatomer subunit zeta-1

coatomer subunit zeta-2

SNARE-like superfamily protein

coatomer subunit zeta-1

nonclathrin coat protein zeta1-COP

nonclathrin coat protein zeta2-COP

coatomer subunit zeta-1

coatomer subunit zeta-3

coatomer subunit zeta-1

coatomer subunit zeta-3

coatomer subunit zeta-2

coatomer subunit zeta-1

coatomer subunit zeta-2

coatomer subunit zeta-3

coatomer subunit zeta-1-like

coatomer subunit zeta-2-like

coatomer subunit zeta-1

coatomer subunit zeta-1-like

coatomer subunit zeta-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa00510	N-Glycan biosynthesis	3
osa00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03083	Polycomb repressive complex	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	2
bdi01250	Biosynthesis of nucleotide sugars	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	6
sbi03060	Protein export	3
sbi04145	Phagosome	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2
sbi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath00510	N-Glycan biosynthesis	3
ath00513	Various types of N-glycan biosynthesis	3
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly00190	Oxidative phosphorylation	2
sly04142	Lysosome	2
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	4
bra00040	Pentose and glucuronate interconversions	2
bra00053	Ascorbate and aldarate metabolism	2
bra00520	Amino sugar and nucleotide sugar metabolism	2
bra00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03060	Protein export	2
vvi03010	Ribosome	2
vvi00020	Citrate cycle (TCA cycle)	2
vvi00620	Pyruvate metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	3
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo01250	Biosynthesis of nucleotide sugars	3
ppo00051	Fructose and mannose metabolism	2
ppo00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04145	Phagosome	4
mtr03060	Protein export	3
mtr04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3
ghi04130	SNARE interactions in vesicular transport	2
ghi04517	IgSF CAM signaling	2
ghi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3
ghi00100	Steroid biosynthesis	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04070	Phosphatidylinositol signaling system	2
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04070	Phosphatidylinositol signaling system	2
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2
bna00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot00541	Biosynthesis of various nucleotide sugars	2
sot01250	Biosynthesis of nucleotide sugars	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	4
nta00730	Thiamine metabolism	4
nta01232	Nucleotide metabolism	4
nta01240	Biosynthesis of cofactors	4
nta00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	3

Expression

Expression pattern

Entrez Gene ID^*

4339020

4329152

123062528

123079685

123395922

123445372

100838162

100840047

542595

541628

110430029

110433135

826411

100775726

543512

543513

103838465

103870517

100260697

100260064

18096792

18095292

11426596

25500499

107900686

121230873

106439187

106452767

102599693

102591694

102622793

102630090

107828257

107804557

5726853

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Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	2	2	2	3	2	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4329152 (osa-u.5 coexpression data)

Top 50 enrichment test to 4329152 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**