ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4343845	COBRA-like protein 6
osa-u.5	4334147	COBRA-like protein 3
osa-u.5	4333114	COBRA-like protein 5
tae-r.2	123049694	COBRA-like protein 7
tae-r.2	123102634	COBRA-like protein 5
tae-r.2	123096176	COBRA-like protein 2
hvu-r.1	123452279	COBRA-like protein 3
hvu-r.1	123447814	COBRA-like protein 2
hvu-r.1	123442574	COBRA-like protein 5
bdi-r.1	100829328	COBRA-like protein 2
bdi-r.1	100829029	COBRA-like protein 5
zma-u.5	100037799	brittle stalk-2-like protein 6
zma-u.5	100037800	brittle stalk-2-like protein 7
zma-u.5	541793	brittle stalk-2-like protein 3
sbi-r.1	8070042	COBRA-like protein 5
ath-u.5	IRX6	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
ath-u.5	COBL1	COBRA-like protein 1 precursor
ath-u.5	COBL2	COBRA-like protein 2 precursor
gma-u.5	100783410	COBRA-like protein 4-like
gma-u.5	100811581	protein COBRA
sly-u.5	101260119	COBRA-like protein 4
sly-u.5	101259823	COBRA-like protein 1
sly-u.5	101253146	COBRA-like protein 4
bra-r.6	103875066	COBRA-like protein 2
bra-r.6	103837359	protein COBRA
bra-r.6	103849801	COBRA-like protein 2
vvi-u.5	100263436	protein COBRA
vvi-u.5	100263971	protein COBRA
mtr-u.5	25495418	COBRA-like protein 1
mtr-u.5	25495419	protein COBRA
ghi-r.1	107946555	protein COBRA
bna-r.1	125587582	COBRA-like protein 1
bna-r.1	106453132	COBRA-like protein 6
bna-r.1	106432032	COBRA-like protein 4
sot-r.1	102604326	COBRA-like protein 4
sot-r.1	102590522	COBRA-like protein 4
cit-r.1	102609762	protein COBRA-like
cit-r.1	102610075	COBRA-like protein 4
nta-r.1	107806738	COBRA-like protein 4
nta-r.1	107768224	protein COBRA-like
nta-r.1	107763917	COBRA-like protein 6

Top 50 coexpressed genes to 4343845 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4343845 (osa-u.5 coexpression data)

CoexMap"4336536"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0052324 [list] [network] plant-type cell wall cellulose biosynthetic process	(8 genes)	IEA
GO:0010215 [list] [network] cellulose microfibril organization	(11 genes)	IEA

GO CC

GO:0005886 [list] [network] plasma membrane

(1164 genes)

IEA

GO MF

Protein

NP_001406654.1 [sequence] [blastp]
XP_025880327.1 [sequence] [blastp]
XP_025880328.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, vacu 3, nucl_plas 3	(predict for NP_001406654.1)
nucl 4, plas 2, chlo 1, cyto 1, E.R. 1, cyto_E.R. 1	(predict for XP_025880327.1)
chlo 4, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, cyto_E.R. 1	(predict for XP_025880328.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_001406654.1)
mito 8, other 5	(predict for XP_025880327.1)
scret 9	(predict for XP_025880328.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4343845	osa-u.5 for 4334147	osa-u.5 for 4333114	tae-r.2 for 123049694	tae-r.2 for 123102634	tae-r.2 for 123096176	hvu-r.1 for 123452279	hvu-r.1 for 123447814	hvu-r.1 for 123442574	bdi-r.1 for 100829328	bdi-r.1 for 100829029	zma-u.5 for 100037799	zma-u.5 for 100037800	zma-u.5 for 541793	sbi-r.1 for 8070042	ath-u.5 for IRX6	ath-u.5 for COBL1	ath-u.5 for COBL2	gma-u.5 for 100783410	gma-u.5 for 100811581	sly-u.5 for 101260119	sly-u.5 for 101259823	sly-u.5 for 101253146	bra-r.6 for 103875066	bra-r.6 for 103837359	bra-r.6 for 103849801	vvi-u.5 for 100263436	vvi-u.5 for 100263971	mtr-u.5 for 25495418	mtr-u.5 for 25495419	ghi-r.1 for 107946555	bna-r.1 for 125587582	bna-r.1 for 106453132	bna-r.1 for 106432032	sot-r.1 for 102604326	sot-r.1 for 102590522	cit-r.1 for 102609762	cit-r.1 for 102610075	nta-r.1 for 107806738	nta-r.1 for 107768224	nta-r.1 for 107763917

Ortholog

Ortholog ID: 307

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

COBL2

COBL6

COB

Function^*

COBRA-like protein 6

COBRA-like protein 5

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 1

COBRA-like protein 3

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 3

COBRA-like protein 1

brittle stalk-2-like protein 6

brittle stalk-2-like protein 3

brittle stalk-2-like protein 4

COBRA-like protein 5

COBRA-like protein 3

COBRA-like protein 2 precursor

COBRA-like protein 6 precursor

COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

COBRA-like protein 4-like

protein COBRA

protein COBRA-like

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 6

protein COBRA

COBRA-like protein 4

protein COBRA

COBRA-like protein 4

COBRA-like protein 2

COBRA-like protein 1

protein COBRA

COBRA-like protein 1

COBRA-like protein 2

COBRA-like protein 6

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 4

protein COBRA-like

COBRA-like protein 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00999	Biosynthesis of various plant secondary metabolites	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	3
bra00053	Ascorbate and aldarate metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00051	Fructose and mannose metabolism	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

4343845

4333114

4343844

123105056

123188006

123128916

123447814

123429721

123403280

100823628

100037799

541793

100037798

8070042

8085923

822697

837508

836213

100783410

100815926

100782876

101253146

101251844

112940047

103860552

103856152

100263436

100263971

100244586

7480591

7480590

25495418

25495419

107951886

107955737

106399754

106346245

106362383

102604326

102598920

102584372

102609762

102610075

107806738

107807501

107807502

The preparation time of this page was 0.2 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	mtr	ghi	bna	sot	cit	nta	ppo	cre
Paralog	3	3	3	2	3	1	3	2	3	3	2	2	1	3	2	2	3	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4343845 (osa-u.5 coexpression data)

Top 50 enrichment test to 4343845 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**