ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4346322	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
osa-r.6	4346322	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
osa-m.8	4346322	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
osa-e.1	4346322	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
osa-u.5	4328449	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
osa-u.5	9268257	uncharacterized LOC9268257
osa-u.5	4336825	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
tae-r.2	123066774	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like
tae-r.2	123162507	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
tae-r.2	123167559	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
hvu-r.1	123427883	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like
hvu-r.1	123402929	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
bdi-r.1	100836170	uncharacterized LOC100836170
bdi-r.1	100832335	uncharacterized LOC100832335
zma-u.5	100277057	uncharacterized LOC100277057
zma-u.5	100276787	uncharacterized LOC100276787
zma-u.5	100277728	PLATZ transcription factor
sbi-r.1	110435101	uncharacterized LOC110435101
ath-u.5	AT2G12646	PLATZ transcription factor family protein
ath-u.5	AT1G76590	PLATZ transcription factor family protein
gma-u.5	100791221	uncharacterized LOC100791221
gma-u.5	100792668	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
sly-u.5	101268014	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like
sly-u.5	101260164	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
bra-r.6	103840146	uncharacterized LOC103840146
vvi-u.5	100855200	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
vvi-u.5	100246080	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
mtr-u.5	11430511	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
mtr-u.5	11418769	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
ghi-r.1	107911898	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
ghi-r.1	107912180	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
ghi-r.1	107918054	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
bna-r.1	106441926	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
bna-r.1	106376055	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
sot-r.1	102599612	uncharacterized LOC102599612
sot-r.1	102593997	uncharacterized LOC102593997
sot-r.1	102600336	uncharacterized LOC102600336
cit-r.1	102606851	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like
cit-r.1	102616377	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
nta-r.1	107798225	uncharacterized LOC107798225
nta-r.1	107793937	protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
cre-r.1	CHLRE_16g650400v5	uncharacterized protein

Top 50 coexpressed genes to 4346322 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4346322 (osa-u.5 coexpression data)

CoexMap"4346322"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_015649011.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, cyto 1, mito 1, chlo_mito 1

(predict for XP_015649011.1)

Subcellular
localization
TargetP

chlo 4, other 4

(predict for XP_015649011.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4346322	osa-r.6 for 4346322	osa-m.8 for 4346322	osa-e.1 for 4346322	osa-u.5 for 4328449	osa-u.5 for 9268257	osa-u.5 for 4336825	tae-r.2 for 123066774	tae-r.2 for 123162507	tae-r.2 for 123167559	hvu-r.1 for 123427883	hvu-r.1 for 123402929	bdi-r.1 for 100836170	bdi-r.1 for 100832335	zma-u.5 for 100277057	zma-u.5 for 100276787	zma-u.5 for 100277728	sbi-r.1 for 110435101	ath-u.5 for AT2G12646	ath-u.5 for AT1G76590	gma-u.5 for 100791221	gma-u.5 for 100792668	sly-u.5 for 101268014	sly-u.5 for 101260164	bra-r.6 for 103840146	vvi-u.5 for 100855200	vvi-u.5 for 100246080	mtr-u.5 for 11430511	mtr-u.5 for 11418769	ghi-r.1 for 107911898	ghi-r.1 for 107912180	ghi-r.1 for 107918054	bna-r.1 for 106441926	bna-r.1 for 106376055	sot-r.1 for 102599612	sot-r.1 for 102593997	sot-r.1 for 102600336	cit-r.1 for 102606851	cit-r.1 for 102616377	nta-r.1 for 107798225	nta-r.1 for 107793937	cre-r.1 for CHLRE_16g650400v5

Ortholog

Ortholog ID: 82

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

uncharacterized LOC9268257

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like

uncharacterized LOC123436146

uncharacterized LOC100836876

uncharacterized LOC100279056

uncharacterized LOC100502289

uncharacterized LOC100192517

uncharacterized LOC110435101

uncharacterized LOC8083473

PLATZ transcription factor family protein

uncharacterized LOC100784644

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

uncharacterized LOC103827715

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

uncharacterized LOC102585868

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1-like

protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	3
tae00730	Thiamine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00380	Tryptophan metabolism	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	4
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

4328449

9268257

4341780

123154220

123427883

123404376

123436146

100836876

100279056

100502289

100192517

110435101

8083473

3768403

839990

838694

100784644

100803076

100810757

101268014

101268004

101246472

103827715

100246080

7491860

11444793

11430670

11435523

107918853

107961345

107946753

106406919

106412045

106421515

102585868

102606851

107793937

5723724

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Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	mtr	ghi	bna	sot	cit	nta	cre	ppo
Paralog	7	3	2	2	3	1	2	2	2	1	2	2	3	2	3	2	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4346322 (osa-u.5 coexpression data)

Top 50 enrichment test to 4346322 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**