ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4350746	uncharacterized LOC4350746
osa-r.6	4350746	uncharacterized LOC4350746
osa-m.8	4350746	uncharacterized LOC4350746
osa-e.1	4350746	uncharacterized LOC4350746
tae-r.2	123187537	THUMP domain-containing protein 1 homolog
tae-r.2	123051602	uncharacterized LOC123051602
tae-r.2	123043742	uncharacterized LOC123043742
hvu-r.1	123424762	translation initiation factor IF-2
bdi-r.1	100835461	uncharacterized LOC100835461
zma-u.5	100282152	uncharacterized LOC100282152
sbi-r.1	8071932	uncharacterized LOC8071932
ath-u.5	AT5G12410	THUMP domain-containing protein
gma-u.5	100812892	uncharacterized LOC100812892
gma-u.5	100776466	THUMP domain-containing protein 1 homolog
sly-u.5	101265890	uncharacterized LOC101265890
bra-r.6	103855976	THUMP domain-containing protein 1
bra-r.6	103846640	THUMP domain-containing protein 1
vvi-u.5	100244787	uncharacterized LOC100244787
ppo-u.5	7467981	uncharacterized LOC7467981
ppo-u.5	7467389	uncharacterized LOC7467389
mtr-u.5	11436214	THUMP domain-containing protein 1 homolog
ghi-r.1	107891433	THUMP domain-containing protein 1
ghi-r.1	107889304	THUMP domain-containing protein 1
bna-r.1	106419840	THUMP domain-containing protein 1
bna-r.1	106372367	THUMP domain-containing protein 1
bna-r.1	106424592	YTH domain-containing protein 1
sot-r.1	102579706	THUMP domain-containing protein 1 homolog
cit-r.1	102627041	uncharacterized LOC102627041
nta-r.1	107777364	uncharacterized LOC107777364
nta-r.1	107782019	uncharacterized LOC107782019
cre-r.1	CHLRE_14g629550v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006400 [list] [network] tRNA modification

(77 genes)

IEA

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1223 genes)

IEA

Protein

XP_015617086.1 [sequence] [blastp]
XP_025877406.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, pero 4, chlo 1	(predict for XP_015617086.1)
nucl 4, chlo 3, pero 3	(predict for XP_025877406.1)

Subcellular
localization
TargetP

other 7, chlo 5	(predict for XP_015617086.1)
other 7, chlo 5	(predict for XP_025877406.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4350746	osa-r.6 for 4350746	osa-m.8 for 4350746	osa-e.1 for 4350746	tae-r.2 for 123187537	tae-r.2 for 123051602	tae-r.2 for 123043742	hvu-r.1 for 123424762	bdi-r.1 for 100835461	zma-u.5 for 100282152	sbi-r.1 for 8071932	ath-u.5 for AT5G12410	gma-u.5 for 100812892	gma-u.5 for 100776466	sly-u.5 for 101265890	bra-r.6 for 103855976	bra-r.6 for 103846640	vvi-u.5 for 100244787	ppo-u.5 for 7467981	ppo-u.5 for 7467389	mtr-u.5 for 11436214	ghi-r.1 for 107891433	ghi-r.1 for 107889304	bna-r.1 for 106419840	bna-r.1 for 106372367	bna-r.1 for 106424592	sot-r.1 for 102579706	cit-r.1 for 102627041	nta-r.1 for 107777364	nta-r.1 for 107782019	cre-r.1 for CHLRE_14g629550v5

Ortholog

Ortholog ID: 8126

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC4350746

THUMP domain-containing protein 1 homolog

uncharacterized LOC123051602

uncharacterized LOC123043742

translation initiation factor IF-2

uncharacterized LOC100835461

uncharacterized LOC100282152

uncharacterized LOC8071932

THUMP domain-containing protein

uncharacterized LOC100812892

THUMP domain-containing protein 1 homolog

uncharacterized LOC101265890

THUMP domain-containing protein 1

uncharacterized LOC100244787

uncharacterized LOC7467981

uncharacterized LOC7467389

THUMP domain-containing protein 1 homolog

THUMP domain-containing protein 1

YTH domain-containing protein 1

THUMP domain-containing protein 1 homolog

uncharacterized LOC102627041

uncharacterized LOC107777364

uncharacterized LOC107782019

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma03040	Spliceosome	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	9
gma03040	Spliceosome	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	3
bna03410	Base excision repair	3
bna03420	Nucleotide excision repair	3
bna03440	Homologous recombination	3
bna00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00052	Galactose metabolism	2
bna00561	Glycerolipid metabolism	2
bna00600	Sphingolipid metabolism	2
bna00603	Glycosphingolipid biosynthesis - globo and isoglobo series	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00052	Galactose metabolism	3
bna00561	Glycerolipid metabolism	3
bna00600	Sphingolipid metabolism	3
bna00603	Glycosphingolipid biosynthesis - globo and isoglobo series	3
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta00270	Cysteine and methionine metabolism	2
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta00270	Cysteine and methionine metabolism	2
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

4350746

123187537

123051602

123043742

123424762

100835461

100282152

8071932

831116

100812892

100776466

101265890

103855976

103846640

100244787

7467981

7467389

11436214

107891433

107889304

106372367

106424592

106454627

102579706

102627041

107777364

107782019

5718364

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4350746 (osa-u.5 coexpression data)

Top 50 enrichment test to 4350746 (osa-u.5 coexpression data)


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	1	1	1	1	1	2	1	2	1	2	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4350746 (osa-u.5 coexpression data)

Top 50 enrichment test to 4350746 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**