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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   ycf3   photosystem I assembly protein Ycf3 
 ppo-r.4   ycf3   photosystem I assembly protein Ycf3 
 gma-u.5   ycf3   photosystem I assembly protein Ycf3 
 mtr-u.5   ycf3   photosystem I assembly protein Ycf3 
 ath-u.5   ycf3   photosystem I assembly protein Ycf3 
 vvi-u.5   ycf3   photosystem I assembly protein Ycf3 
 sly-u.5   ycf3   photosystem I assembly protein ycf3 
 osa-u.5   ycf3   photosystem I assembly protein Ycf3 
 zma-u.5   118473658   photosystem I assembly protein Ycf3 
 zma-u.5   118473924   photosystem I assembly protein Ycf3 

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Top 50 coexpressed genes to ycf3 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ycf3 (ppo-u.5 coexpression data)

CoexMap"4929664"


ppoycf3 | Entrez gene ID : 4929664    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein YP_001109502.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  mito 3,  cyto_plas 3  (predict for YP_001109502.1)
Subcellular
localization
TargetP
other 5  (predict for YP_001109502.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
ycf3

.
ppo-r.4
for
ycf3

.
gma-u.5
for
ycf3

.
mtr-u.5
for
ycf3

.
ath-u.5
for
ycf3

.
vvi-u.5
for
ycf3

.
sly-u.5
for
ycf3

.
osa-u.5
for
ycf3

.
zma-u.5
for
118473658

.
zma-u.5
for
118473924

.


Ortholog ID: 1894
Species ath gma sly osa zma vvi ppo mtr tae hvu ghi ghi bna sbi sot cit bdi nta
Symbol ycf3 ycf3 ycf3 ycf3 LOC118476050 ycf3 ycf3 ycf3 LOC123046759 LOC123419409 LOC121204614 ycf3 LOC125604653 ycf3 ycf3 ycf3 ycf3 ycf3
Function* photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3 photosystem I assembly protein Ycf3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 4
ath03010 Ribosome 4
ath03020 RNA polymerase 3
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma00195 Photosynthesis 4
gma03020 RNA polymerase 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00970 Aminoacyl-tRNA biosynthesis 6
sly00195 Photosynthesis 3
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 8
osa00190 Oxidative phosphorylation 6
osa00970 Aminoacyl-tRNA biosynthesis 4
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 6
vvi00195 Photosynthesis 4
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr00195 Photosynthesis 6
mtr00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 13
hvu00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
ghi00190 Oxidative phosphorylation 5
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi03010 Ribosome 3
ghi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
bna00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi00190 Oxidative phosphorylation 5
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot00190 Oxidative phosphorylation 2
sot00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 7
bdi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 7
nta03010 Ribosome 7
nta00190 Oxidative phosphorylation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844767 3989265 3950429 3131456 118476050 4025092 4929664 5333174 123046759 123419409 121204614 3989215 125604653 4549121 4099970 4271132 6439779 800437
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