ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	541818	prohibitin 4
zma-r.6	541818	prohibitin 4
zma-m.5	541818	prohibitin 4
zma-u.5	542542	prohibitin 1
sbi-r.1	8079644	prohibitin-1, mitochondrial
sbi-r.1	8084587	prohibitin-2, mitochondrial
osa-u.5	4342874	prohibitin-2, mitochondrial
osa-u.5	4334737	prohibitin-2, mitochondrial
tae-r.2	123123738	prohibitin-1, mitochondrial
tae-r.2	123068814	prohibitin-1, mitochondrial
tae-r.2	123114253	prohibitin-1, mitochondrial
hvu-r.1	123395014	prohibitin-1, mitochondrial-like
bdi-r.1	100828666	prohibitin-1, mitochondrial
bdi-r.1	100835660	prohibitin-2, mitochondrial
ath-u.5	PHB6	prohibitin 6
ath-u.5	PHB1	prohibitin 1
gma-u.5	100793227	prohibitin-1, mitochondrial
gma-u.5	100811958	prohibitin-2-like
gma-u.5	100806763	prohibitin-2-like
sly-u.5	101267849	prohibitin-1, mitochondrial
bra-r.6	103844307	prohibitin-2, mitochondrial
bra-r.6	103854389	prohibitin-1, mitochondrial
bra-r.6	103836600	prohibitin-2, mitochondrial
vvi-u.5	100267721	prohibitin-2-like
vvi-u.5	100250221	prohibitin-2-like
ppo-u.5	18106818	prohibitin-1, mitochondrial
ppo-u.5	7469570	prohibitin-1, mitochondrial
mtr-u.5	25487714	prohibitin-1, mitochondrial
mtr-u.5	11444983	prohibitin-1, mitochondrial
ghi-r.1	107896954	prohibitin-1, mitochondrial
ghi-r.1	107959895	prohibitin-1, mitochondrial
ghi-r.1	107909497	prohibitin-1, mitochondrial
bna-r.1	106438101	prohibitin-1, mitochondrial
bna-r.1	111208853	prohibitin-2, mitochondrial
bna-r.1	106369265	prohibitin-2, mitochondrial-like
sot-r.1	102582885	prohibitin-1, mitochondrial-like
sot-r.1	102592788	prohibitin-1, mitochondrial-like
cit-r.1	102622624	prohibitin-1, mitochondrial
cit-r.1	102628560	prohibitin-1, mitochondrial-like
nta-r.1	107830874	prohibitin-1, mitochondrial
nta-r.1	107811497	prohibitin-1, mitochondrial
nta-r.1	107801483	prohibitin-1, mitochondrial
cre-r.1	CHLRE_02g088000v5	uncharacterized protein

Top 50 coexpressed genes to 541818 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 541818 (zma-u.5 coexpression data)

CoexMap"541818"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007005 [list] [network] mitochondrion organization

(101 genes)

IEA

GO CC

GO:0005739 [list] [network] mitochondrion	(746 genes)	IEA
GO:0016020 [list] [network] membrane	(3751 genes)	IEA

GO MF

Protein

NP_001104969.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto_plas 1, cyto 1, plas 1, cyto_nucl 1, E.R._plas 1, vacu 1, pero 1, nucl 1, E.R. 1

(predict for NP_001104969.2)

Subcellular
localization
TargetP

mito 4, other 4

(predict for NP_001104969.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 541818	zma-r.6 for 541818	zma-m.5 for 541818	zma-u.5 for 542542	sbi-r.1 for 8079644	sbi-r.1 for 8084587	osa-u.5 for 4342874	osa-u.5 for 4334737	tae-r.2 for 123123738	tae-r.2 for 123068814	tae-r.2 for 123114253	hvu-r.1 for 123395014	bdi-r.1 for 100828666	bdi-r.1 for 100835660	ath-u.5 for PHB6	ath-u.5 for PHB1	gma-u.5 for 100793227	gma-u.5 for 100811958	gma-u.5 for 100806763	sly-u.5 for 101267849	bra-r.6 for 103844307	bra-r.6 for 103854389	bra-r.6 for 103836600	vvi-u.5 for 100267721	vvi-u.5 for 100250221	ppo-u.5 for 18106818	ppo-u.5 for 7469570	mtr-u.5 for 25487714	mtr-u.5 for 11444983	ghi-r.1 for 107896954	ghi-r.1 for 107959895	ghi-r.1 for 107909497	bna-r.1 for 106438101	bna-r.1 for 111208853	bna-r.1 for 106369265	sot-r.1 for 102582885	sot-r.1 for 102592788	cit-r.1 for 102622624	cit-r.1 for 102628560	nta-r.1 for 107830874	nta-r.1 for 107811497	nta-r.1 for 107801483	cre-r.1 for CHLRE_02g088000v5

Ortholog

Ortholog ID: 2978

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PHB1

PHB2

Function^*

prohibitin 4

prohibitin 1

prohibitin-1, mitochondrial

prohibitin-2, mitochondrial

prohibitin-1, mitochondrial

prohibitin-1, mitochondrial-like

prohibitin-1, mitochondrial

prohibitin-2, mitochondrial

prohibitin 1

prohibitin 2

prohibitin-1, mitochondrial

prohibitin-2-like

prohibitin-2, mitochondrial

prohibitin-1, mitochondrial

prohibitin-2, mitochondrial

prohibitin-2-like

prohibitin-1, mitochondrial

prohibitin-2, mitochondrial

prohibitin-1, mitochondrial

prohibitin-1, mitochondrial-like

prohibitin-1, mitochondrial

prohibitin-1, mitochondrial-like

prohibitin-1, mitochondrial

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	3
sbi03018	RNA degradation	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi00710	Carbon fixation by Calvin cycle	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	4
osa03010	Ribosome	4
osa00020	Citrate cycle (TCA cycle)	3
osa00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	4
osa00010	Glycolysis / Gluconeogenesis	2
osa01200	Carbon metabolism	2
osa01230	Biosynthesis of amino acids	2
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	9
tae00010	Glycolysis / Gluconeogenesis	7
tae01200	Carbon metabolism	7
tae00710	Carbon fixation by Calvin cycle	5
tae00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	8
tae00010	Glycolysis / Gluconeogenesis	7
tae01230	Biosynthesis of amino acids	7
tae00710	Carbon fixation by Calvin cycle	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	10
hvu00020	Citrate cycle (TCA cycle)	3
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00030	Pentose phosphate pathway	2
hvu00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	5
bdi03010	Ribosome	4
bdi01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	4
ath03008	Ribosome biogenesis in eukaryotes	2
ath03013	Nucleocytoplasmic transport	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00280	Valine, leucine and isoleucine degradation	2
gma00410	beta-Alanine metabolism	2
gma00640	Propanoate metabolism	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03040	Spliceosome	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4
sly03008	Ribosome biogenesis in eukaryotes	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00230	Purine metabolism	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00230	Purine metabolism	3
ppo03040	Spliceosome	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	4
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2
nta03010	Ribosome	2
nta03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	2
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

541818

542542

8079644

8084587

4342874

4334737

123123738

123068814

123114253

123395014

100828666

100835660

828969

839228

100793227

100806763

100804529

101267849

103854389

103835516

103843682

100267721

100250221

18106818

7469570

25487714

11444983

107959895

107909497

107926084

111208853

106370958

106400816

102582885

102592788

102622624

102628560

107830874

107801483

107800968

5727431

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	2	2	3	1	2	2	3	1	3	2	2	2	3	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 541818 (zma-u.5 coexpression data)

Top 50 enrichment test to 541818 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**