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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   543186   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4347871   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4346294   28 kDa ribonucleoprotein, chloroplastic 
 zma-u.5   100282806   uncharacterized LOC100282806 
 zma-u.5   542277   nucleic acid binding protein 1 
 zma-u.5   100191381   uncharacterized LOC100191381 
 ath-u.5   RBP31   31-kDa RNA binding protein 
 ath-u.5   CP31B   chloroplast RNA-binding protein 31B 
 gma-u.5   100811487   RNA recognition motif-containing protein 
 gma-u.5   100790280   31 kDa ribonucleoprotein, chloroplastic-like 
 gma-u.5   100804984   31 kDa ribonucleoprotein, chloroplastic-like 
 sly-u.5   101250878   28 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   100257045   28 kDa ribonucleoprotein, chloroplastic 
 vvi-u.5   100266472   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7467664   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7457790   28 kDa ribonucleoprotein, chloroplastic 
 ppo-u.5   7484435   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   25489530   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   25493685   28 kDa ribonucleoprotein, chloroplastic 

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Top 50 coexpressed genes to 543186 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 543186 (tae-r.2 coexpression data)

CoexMap"543186"


taeLOC543186 | Entrez gene ID : 543186    
Species tae osa zma ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot bna ghi
Paralog 1 2 3 2 3 1 2 3 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (54 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (303 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (862 genes)  IEA  
Protein XP_044398905.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044398905.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_044398905.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
543186

.
osa-u.5
for
4347871

.
osa-u.5
for
4346294

.
zma-u.5
for
100282806

.
zma-u.5
for
542277

.
zma-u.5
for
100191381

.
ath-u.5
for
RBP31

.
ath-u.5
for
CP31B

.
gma-u.5
for
100811487

.
gma-u.5
for
100790280

.
gma-u.5
for
100804984

.
sly-u.5
for
101250878

.
vvi-u.5
for
100257045

.
vvi-u.5
for
100266472

.
ppo-u.5
for
7467664

.
ppo-u.5
for
7457790

.
ppo-u.5
for
7484435

.
mtr-u.5
for
25489530

.
mtr-u.5
for
25493685

.


Ortholog ID: 3364
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol CP31B RBP31 LOC100790280 LOC100804984 LOC101250878 LOC4346294 LOC4347871 LOC542277 LOC100191381 LOC103861504 LOC103834898 LOC100257045 LOC100266472 LOC7484435 LOC7467664 LOC25489530 LOC25493685 LOC123104863 LOC100415840 LOC123452051 LOC123410630 LOC121219340 LOC107953551 LOC106427405 LOC106442312 LOC8057999 LOC8061671 LOC102598291 LOC102607837 LOC100823320 LOC100821951 LOC107769683 LOC107772527
Function* chloroplast RNA-binding protein 31B 31-kDa RNA binding protein 31 kDa ribonucleoprotein, chloroplastic-like 31 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic nucleic acid binding protein 1 uncharacterized LOC100191381 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic-like 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic 31 kDa ribonucleoprotein, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03060 Protein export 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr01240 Biosynthesis of cofactors 3
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu00195 Photosynthesis 2
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03060 Protein export 2
ghi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835090 828579 100790280 100804984 101250878 4346294 4347871 542277 100191381 103861504 103834898 100257045 100266472 7484435 7467664 25489530 25493685 123104863 100415840 123452051 123410630 121219340 107953551 106427405 106442312 8057999 8061671 102598291 102607837 100823320 100821951 107769683 107772527
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