ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	lanceolate	cycloidea
sly-r.6	lanceolate	cycloidea
sly-m.5	lanceolate	cycloidea
sly-u.5	TCP10	TCP transcription factor 10
sly-u.5	TCP3	TCP transcription factor 3
ath-u.5	TCP10	TCP domain protein 10
ath-u.5	TCP4	TCP family transcription factor 4
ath-u.5	TCP3	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
gma-u.5	100811837	transcription factor TCP4
gma-u.5	100810078	transcription factor TCP3
gma-u.5	100802063	transcription factor TCP4
vvi-u.5	100248756	transcription factor TCP4
vvi-u.5	100243659	transcription factor TCP4
ppo-u.5	18095390	transcription factor TCP4
ppo-u.5	7467463	transcription factor TCP4
ppo-u.5	7471894	transcription factor TCP4
mtr-u.5	25487262	transcription factor TCP4
mtr-u.5	25502512	transcription factor TCP4
mtr-u.5	25487743	transcription factor TCP4
osa-u.5	4325252	transcription factor PCF5-like

Annotation

functional annotation

KEGG

GO BP

GO:2000032 [list] [network] regulation of secondary shoot formation

(18 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(778 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1125 genes)	IEA

Protein

NP_001234335.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_001234335.2)

Subcellular
localization
TargetP

other 7

(predict for NP_001234335.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for lanceolate	sly-r.6 for lanceolate	sly-m.5 for lanceolate	sly-u.5 for TCP10	sly-u.5 for TCP3	ath-u.5 for TCP10	ath-u.5 for TCP4	ath-u.5 for TCP3	gma-u.5 for 100811837	gma-u.5 for 100810078	gma-u.5 for 100802063	vvi-u.5 for 100248756	vvi-u.5 for 100243659	ppo-u.5 for 18095390	ppo-u.5 for 7467463	ppo-u.5 for 7471894	mtr-u.5 for 25487262	mtr-u.5 for 25502512	mtr-u.5 for 25487743	osa-u.5 for 4325252

Ortholog

Ortholog ID: 2072

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

tae

hvu

sbi

bdi

Symbol

TCP3

TCP3

TCP10

Function^*

cycloidea

TCP transcription factor 3

transcription factor TCP4-like

transcription factor TCP4

TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

TCP domain protein 10

transcription factor TCP3

transcription factor TCP4

transcription factor TCP10

transcription factor TCP4

transcription factor TCP10

transcription factor TCP4-like

transcription factor TCP4

transcription factor TCP4-like

transcription factor PCF5-like

transcription factor PCF5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	4
sly00630	Glyoxylate and dicarboxylate metabolism	3
sly00710	Carbon fixation by Calvin cycle	3
sly00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	4
gma03013	Nucleocytoplasmic transport	2
gma00290	Valine, leucine and isoleucine biosynthesis	2
gma00770	Pantothenate and CoA biosynthesis	2
gma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr02010	ABC transporters	2
mtr04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu00940	Phenylpropanoid biosynthesis	3
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	2
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

543617

100037513

102578818

102601150

107794461

107786783

841756

817659

100796938

100802063

103869962

103867916

100248756

7471894

18095390

25502512

107954451

107920204

106435851

106349336

102615089

102619329

4325252

123069224

123077744

123443148

8079512

100827760

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to lanceolate (sly-u.5 coexpression data)

Top 50 enrichment test to lanceolate (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae	zma
Paralog	5	3	3	2	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to lanceolate (sly-u.5 coexpression data)

Top 50 enrichment test to lanceolate (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**