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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   543796   probable beta-1,4-xylosyltransferase IRX9H 
 sly-r.6   543796   probable beta-1,4-xylosyltransferase IRX9H 
 sly-m.5   543796   probable beta-1,4-xylosyltransferase IRX9H 
 sly-u.5   101262137   probable beta-1,4-xylosyltransferase IRX9H 
 sly-u.5   101247584   probable beta-1,4-xylosyltransferase IRX9H 
 ath-u.5   IRX9-L   Nucleotide-diphospho-sugar transferases superfamily protein 
 gma-u.5   100809892   probable beta-1,4-xylosyltransferase IRX9H 
 gma-u.5   100789348   probable beta-1,4-xylosyltransferase IRX9H 
 gma-u.5   100790621   probable beta-1,4-xylosyltransferase IRX9H 
 vvi-u.5   100248926   probable beta-1,4-xylosyltransferase IRX9H 
 vvi-u.5   100257821   probable beta-1,4-xylosyltransferase IRX9H 
 ppo-u.5   7495702   probable beta-1,4-xylosyltransferase IRX9H 
 ppo-u.5   7467207   probable beta-1,4-xylosyltransferase IRX9H 
 mtr-u.5   11437095   probable beta-1,4-xylosyltransferase IRX9H 
 mtr-u.5   25490116   probable beta-1,4-xylosyltransferase IRX9H 
 osa-u.5   4348270   probable glucuronosyltransferase Os10g0205300 
 osa-u.5   4339589   probable glucuronosyltransferase Os05g0559600 
 osa-u.5   4334894   probable glucuronosyltransferase Os04g0103100 
 zma-u.5   606445   glycosyltransferase 
 zma-u.5   103639412   probable beta-1,4-xylosyltransferase GT43E 
 zma-u.5   100383623   uncharacterized LOC100383623 

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Top 50 coexpressed genes to 543796 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 543796 (sly-u.5 coexpression data)

CoexMap"543796"


slyLOC543796 | Entrez gene ID : 543796    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 1 3 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010417 [list] [network] glucuronoxylan biosynthetic process  (9 genes)  IEA  
GO:0009834 [list] [network] plant-type secondary cell wall biogenesis  (31 genes)  IEA  
GO CC
GO:0000139 [list] [network] Golgi membrane  (75 genes)  IEA  
GO MF
GO:0015018 [list] [network] galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity  (5 genes)  IEA  
GO:0042285 [list] [network] xylosyltransferase activity  (7 genes)  IEA  
Protein XP_004238039.1 [sequence] [blastp]
XP_010320243.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 3,  chlo 3,  cyto_mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_004238039.1)
mito 3,  chlo 3,  cyto_mito 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_010320243.1)
Subcellular
localization
TargetP
chlo 5,  mito 3  (predict for XP_004238039.1)
chlo 5,  mito 3  (predict for XP_010320243.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
543796

.
sly-r.6
for
543796

.
sly-m.5
for
543796

.
sly-u.5
for
101262137

.
sly-u.5
for
101247584

.
ath-u.5
for
IRX9-L

.
gma-u.5
for
100809892

.
gma-u.5
for
100789348

.
gma-u.5
for
100790621

.
vvi-u.5
for
100248926

.
vvi-u.5
for
100257821

.
ppo-u.5
for
7495702

.
ppo-u.5
for
7467207

.
mtr-u.5
for
11437095

.
mtr-u.5
for
25490116

.
osa-u.5
for
4348270

.
osa-u.5
for
4339589

.
osa-u.5
for
4334894

.
zma-u.5
for
606445

.
zma-u.5
for
103639412

.
zma-u.5
for
100383623

.


Ortholog ID: 1723
Species ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol IRX9-L LOC100808765 LOC100790621 LOC543796 LOC101262137 LOC4334894 LOC4348270 LOC100192819 LOC103639412 LOC103829053 LOC100257821 LOC100248926 LOC7495702 LOC7467207 LOC11437095 LOC25490116 LOC123078994 LOC123051131 LOC123444096 LOC123424424 LOC107951126 LOC107942179 LOC106358029 LOC125574986 LOC8074584 LOC8056947 LOC102584882 LOC102584156 LOC102622234 LOC102615799 LOC100827153 LOC100841498 LOC107787593 LOC107819108
Function* Nucleotide-diphospho-sugar transferases superfamily protein probable beta-1,4-xylosyltransferase IRX9H-like probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable glucuronosyltransferase Os04g0103100 probable glucuronosyltransferase Os10g0205300 putative beta-14-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase GT43E probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9L probable glucuronosyltransferase Os04g0103100 probable beta-1,4-xylosyltransferase IRX9L probable glucuronosyltransferase Os04g0103100 probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable glucuronosyltransferase Os05g0559600 probable glucuronosyltransferase Os04g0103100 probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable beta-1,4-xylosyltransferase IRX9H probable glucuronosyltransferase Os05g0559600 probable glucuronosyltransferase Os04g0103100 putative beta-1,4-xylosyltransferase IRX9H putative beta-1,4-xylosyltransferase IRX9H
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 6
bra04142 Lysosome 4
bra05100 Bacterial invasion of epithelial cells 4
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi00541 Biosynthesis of various nucleotide sugars 2
vvi03015 mRNA surveillance pathway 2
vvi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 5
mtr01240 Biosynthesis of cofactors 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi00240 Pyrimidine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00410 beta-Alanine metabolism 3
sbi00770 Pantothenate and CoA biosynthesis 2
sbi00071 Fatty acid degradation 2
sbi01040 Biosynthesis of unsaturated fatty acids 2
sbi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00510 N-Glycan biosynthesis 4
sot04141 Protein processing in endoplasmic reticulum 4
sot00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839652 100808765 100790621 543796 101262137 4334894 4348270 100192819 103639412 103829053 100257821 100248926 7495702 7467207 11437095 25490116 123078994 123051131 123444096 123424424 107951126 107942179 106358029 125574986 8074584 8056947 102584882 102584156 102622234 102615799 100827153 100841498 107787593 107819108
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