ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	MCA1	metacaspase 1
sly-r.6	MCA1	metacaspase 1
sly-m.5	MCA1	metacaspase 1
sot-r.1	102582386	metacaspase-4-like
nta-r.1	107827320	metacaspase-4
nta-r.1	107824366	metacaspase-4
ath-u.5	MC7	metacaspase 7
ath-u.5	MC6	metacaspase 6
gma-u.5	100527809	putative metacaspase
gma-u.5	100795043	metacaspase-4
bra-r.6	103832407	metacaspase-6
bra-r.6	103830489	metacaspase-7
vvi-u.5	100241522	metacaspase-5-like
ppo-u.5	7464570	metacaspase-4
ppo-u.5	7462136	metacaspase-5
mtr-u.5	25502442	metacaspase-5
ghi-r.1	107919806	metacaspase-4
ghi-r.1	107893541	metacaspase-4
bna-r.1	106381519	metacaspase-5
bna-r.1	106403804	metacaspase-7-like
bna-r.1	125576403	metacaspase-5-like
cit-r.1	102622340	metacaspase-4
osa-u.5	4339206	metacaspase-5
osa-u.5	4339205	metacaspase-6
osa-u.5	4327953	metacaspase-5
zma-u.5	100285605	metacaspase type II
zma-u.5	100274565	uncharacterized LOC100274565
zma-u.5	100272384	uncharacterized LOC100272384
tae-r.2	123061012	metacaspase-4
tae-r.2	100415872	metacaspase-4
tae-r.2	123062308	metacaspase-4
hvu-r.1	123444617	metacaspase-4-like
sbi-r.1	8064185	uncharacterized LOC8064185
sbi-r.1	8064187	metacaspase-5
sbi-r.1	8082396	metacaspase-5
bdi-r.1	100831340	metacaspase-5
bdi-r.1	100836742	metacaspase-4
cre-r.1	CHLRE_03g184700v5	uncharacterized protein

Top 50 coexpressed genes to MCA1 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to MCA1 (sly-u.5 coexpression data)

CoexMap"543845"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006508 [list] [network] proteolysis

(837 genes)

IEA

GO CC

GO MF

GO:0004197 [list] [network] cysteine-type endopeptidase activity

(59 genes)

IEA

Protein

NP_001266198.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, plas 1, pero 1, cysk_plas 1

(predict for NP_001266198.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001266198.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for MCA1	sly-r.6 for MCA1	sly-m.5 for MCA1	sot-r.1 for 102582386	nta-r.1 for 107827320	nta-r.1 for 107824366	ath-u.5 for MC7	ath-u.5 for MC6	gma-u.5 for 100527809	gma-u.5 for 100795043	bra-r.6 for 103832407	bra-r.6 for 103830489	vvi-u.5 for 100241522	ppo-u.5 for 7464570	ppo-u.5 for 7462136	mtr-u.5 for 25502442	ghi-r.1 for 107919806	ghi-r.1 for 107893541	bna-r.1 for 106381519	bna-r.1 for 106403804	bna-r.1 for 125576403	cit-r.1 for 102622340	osa-u.5 for 4339206	osa-u.5 for 4339205	osa-u.5 for 4327953	zma-u.5 for 100285605	zma-u.5 for 100274565	zma-u.5 for 100272384	tae-r.2 for 123061012	tae-r.2 for 100415872	tae-r.2 for 123062308	hvu-r.1 for 123444617	sbi-r.1 for 8064185	sbi-r.1 for 8064187	sbi-r.1 for 8082396	bdi-r.1 for 100831340	bdi-r.1 for 100836742	cre-r.1 for CHLRE_03g184700v5

Ortholog

Ortholog ID: 2366

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MCA1

LOC102582386

LOC107827320

LOC107824366

MC7

MC6

Function^*

metacaspase 1

metacaspase-4-like

metacaspase-4

metacaspase 7

metacaspase 6

metacaspase-4

metacaspase-6

metacaspase-5-like

metacaspase-4

metacaspase-5

metacaspase-4

metacaspase-5-like

metacaspase-7-like

metacaspase-4

metacaspase-5

metacaspase-6

metacaspase-5

metacaspase type II

uncharacterized LOC100274565

uncharacterized LOC100272384

metacaspase-4

metacaspase-4-like

uncharacterized LOC8064185

metacaspase-5

metacaspase-4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	2
sly00620	Pyruvate metabolism	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot00561	Glycerolipid metabolism	3
sot00020	Citrate cycle (TCA cycle)	2
sot01200	Carbon metabolism	2
sot01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	7
nta00562	Inositol phosphate metabolism	4
nta04070	Phosphatidylinositol signaling system	4
nta04144	Endocytosis	4
nta00220	Arginine biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	7
nta00562	Inositol phosphate metabolism	4
nta04070	Phosphatidylinositol signaling system	4
nta04144	Endocytosis	4
nta00220	Arginine biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	4
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	8
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	2
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	3
mtr00410	beta-Alanine metabolism	2
mtr00010	Glycolysis / Gluconeogenesis	2
mtr00620	Pyruvate metabolism	2
mtr00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00710	Carbon fixation by Calvin cycle	5
ghi01200	Carbon metabolism	5
ghi00562	Inositol phosphate metabolism	4
ghi00010	Glycolysis / Gluconeogenesis	3
ghi00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00710	Carbon fixation by Calvin cycle	5
ghi01200	Carbon metabolism	5
ghi00562	Inositol phosphate metabolism	4
ghi00010	Glycolysis / Gluconeogenesis	3
ghi00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	6
bna04146	Peroxisome	2
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	3
cit03015	mRNA surveillance pathway	3
cit03040	Spliceosome	3
cit03013	Nucleocytoplasmic transport	2
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00062	Fatty acid elongation	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	8
osa04145	Phagosome	7
osa04142	Lysosome	3
osa00030	Pentose phosphate pathway	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma01250	Biosynthesis of nucleotide sugars	2
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00410	beta-Alanine metabolism	2
zma00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	9
tae00230	Purine metabolism	6
tae00730	Thiamine metabolism	6
tae01232	Nucleotide metabolism	6
tae00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	6
sbi04145	Phagosome	5
sbi04142	Lysosome	4
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	6
bdi01200	Carbon metabolism	5
bdi00010	Glycolysis / Gluconeogenesis	3
bdi00620	Pyruvate metabolism	2
bdi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	4
bdi00710	Carbon fixation by Calvin cycle	2
bdi01200	Carbon metabolism	2
bdi00220	Arginine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2
cre04712	Circadian rhythm - plant	2

Expression

Expression pattern

Entrez Gene ID^*

543845

102582386

107827320

107824366

844269

844270

100795043

100802658

103832407

100241522

7464570

7462136

25502442

107919806

107893541

106365271

106353411

106354779

102622340

4339206

4339205

4327953

100285605

100274565

100272384

123061012

123062308

123079445

123444617

8064185

8064187

8082396

100831340

100836742

5717424

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Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	2	2	2	2	1	2	1	2	3	1	3	3	3	1	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to MCA1 (sly-u.5 coexpression data)

Top 50 enrichment test to MCA1 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**