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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-m.5   TDR8   MADS-box transcription factor TDR8 
 sly-u.5   101244491   MADS-box protein AGL42-like 
 sly-u.5   101267688   MADS-box protein SOC1-like 
 ath-u.5   AGL20   AGAMOUS-like 20 
 ath-u.5   AGL42   AGAMOUS-like 42 
 gma-u.5   100782713   agamous-like MADS-box protein AGL19 
 gma-u.5   100816440   MADS-box protein SOC1 
 vvi-u.5   100268115   MADS-box protein AGL42 
 vvi-u.5   100252657   MADS-box transcription factor 15 
 vvi-u.5   100246102   agamous-like MADS-box protein AGL19 
 ppo-u.5   7482155   MADS-box protein AGL42 
 ppo-u.5   7488925   MADS-box protein SOC1 
 ppo-u.5   7494028   MADS-box protein SOC1 
 mtr-u.5   11432102   MADS-box protein SOC1 
 osa-u.5   4349237   MADS-box transcription factor 56-like 
 osa-u.5   4331445   MADS-box transcription factor 50-like 
 osa-u.5   4327247   MADS-box transcription factor 51-like 
 zma-u.5   100272251   uncharacterized LOC100272251 
 zma-u.5   100382583   uncharacterized LOC100382583 
 zma-u.5   541985   MADS14 

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Top 50 coexpressed genes to TDR8 (sly-m.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TDR8 (sly-m.5 coexpression data)

CoexMap"544076"


slyTDR8 | Entrez gene ID : 544076      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 2 3 3 1 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (133 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (282 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (326 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (499 genes)  IEA  
Protein NP_001234105.2 [sequence] [blastp]
XP_010317531.2 [sequence] [blastp]
XP_069150947.1 [sequence] [blastp]
XP_069150948.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001234105.2)
nucl 6,  cyto 1,  mito 1,  plas 1,  extr 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_010317531.2)
nucl 7,  cyto 1,  mito 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069150947.1)
nucl 7,  cyto 1,  mito 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_069150948.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for NP_001234105.2)
other 8,  mito 5  (predict for XP_010317531.2)
other 8,  mito 5  (predict for XP_069150947.1)
other 8,  mito 5  (predict for XP_069150948.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-m.5
for
TDR8

.
sly-u.5
for
101244491

.
sly-u.5
for
101267688

.
ath-u.5
for
AGL20

.
ath-u.5
for
AGL42

.
gma-u.5
for
100782713

.
gma-u.5
for
100816440

.
vvi-u.5
for
100268115

.
vvi-u.5
for
100252657

.
vvi-u.5
for
100246102

.
ppo-u.5
for
7482155

.
ppo-u.5
for
7488925

.
ppo-u.5
for
7494028

.
mtr-u.5
for
11432102

.
osa-u.5
for
4349237

.
osa-u.5
for
4331445

.
osa-u.5
for
4327247

.
zma-u.5
for
100272251

.
zma-u.5
for
100382583

.
zma-u.5
for
541985

.


Ortholog ID: 245
Species ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AGL14 LOC100807963 LOC100784678 FYFL LOC544075 LOC4349237 LOC4327247 LOC103649797 LOC541985 SOC1 MADS8 LOC100268115 LOC7482155 LOC18094432 LOC25500990 LOC123093767 LOC100125729 LOC123445264 LOC107957281 LOC107963688 LOC106389254 CHLRE_11g467577v5 LOC110431745 LOC8060808 LOC102603784 LOC107058273 LOC102577938 LOC102577939 LOC100824579 LOC100826117 LOC107828738 LOC107776514
Function* AGAMOUS-like 14 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box transcription factor 56-like MADS-box transcription factor 51-like MADS-box transcription factor 51 MADS14 MADS-box protein SOC1-like MADS-box protein MADS-box protein AGL42 MADS-box protein AGL42 agamous-like MADS-box protein AGL19 MADS-box protein SOC1 MADS-box transcription factor 50 MADS-box transcription factor 50 MADS-box transcription factor 51-like MADS-box protein SOC1-like agamous-like MADS-box protein AGL19 MADS-box protein AGL42 uncharacterized protein MADS-box transcription factor 56-like MADS-box transcription factor 51 MADS-box protein SOC1-like MADS-box protein SOC1-like SOC1-like protein 2 SOC1-like protein 1 agamous-like MADS-box protein AGL14-like MADS-box transcription factor 51 MADS-box protein SOC1 MADS-box protein SOC1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826795 100807963 100784678 101266695 544075 4349237 4327247 103649797 541985 103858179 100232995 100268115 7482155 18094432 25500990 123093767 100125729 123445264 107957281 107963688 106389254 5726939 110431745 8060808 102603784 107058273 102577938 102577939 100824579 100826117 107828738 107776514
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