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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   GAI1   DELLA protein GAI 1 
 gma-r.7   GAI1   DELLA protein GAI 1 
 gma-m.5   GAI1   DELLA protein GAI 1 
 gma-u.5   100799695   DELLA protein 1 
 gma-u.5   100797336   DELLA protein 2 
 gma-u.5   GAI2   DELLA protein GAI 2 
 mtr-u.5   25489240   DELLA protein 1-like 
 mtr-u.5   120577405   DELLA protein 2 
 ppo-u.5   7475521   DELLA protein GAIP 
 ppo-u.5   7482891   DELLA protein GAIP-B 
 ppo-u.5   7493546   DELLA protein GAI 
 ath-u.5   RGL1   RGA-like 1 
 ath-u.5   RGA1   GRAS family transcription factor family protein 
 ath-u.5   RGL2   RGA-like 2 
 vvi-u.5   100253268   DELLA protein GAI 
 vvi-u.5   100232937   DELLA protein GAI1 
 sly-u.5   GAI   DELLA protein GAI 
 osa-u.5   4333860   DELLA protein SLR1-like 
 zma-u.5   100191728   DELLA protein DWARF8 
 zma-u.5   100127531   DELLA protein DWARF8-like 

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Top 50 coexpressed genes to GAI1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GAI1 (gma-u.5 coexpression data)

CoexMap"547718"


gmaGAI1 | Entrez gene ID : 547718      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 3 3 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04075 [list] [network] Plant hormone signal transduction (888 genes)
GO BP
GO:0009938 [list] [network] negative regulation of gibberellic acid mediated signaling pathway  (4 genes)  IEA  
GO:0010187 [list] [network] negative regulation of seed germination  (4 genes)  IEA  
GO:0042538 [list] [network] hyperosmotic salinity response  (4 genes)  IEA  
GO:2000033 [list] [network] regulation of seed dormancy process  (4 genes)  IEA  
GO:2000377 [list] [network] regulation of reactive oxygen species metabolic process  (8 genes)  IEA  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (9 genes)  IEA  
GO:0009863 [list] [network] salicylic acid mediated signaling pathway  (10 genes)  IEA  
GO:0009737 [list] [network] response to abscisic acid  (95 genes)  IEA  
GO:0009723 [list] [network] response to ethylene  (145 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (3122 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1503 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2313 genes)  IEA  
Protein NP_001240948.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001240948.1)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for NP_001240948.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
GAI1

.
gma-r.7
for
GAI1

.
gma-m.5
for
GAI1

.
gma-u.5
for
100799695

.
gma-u.5
for
100797336

.
gma-u.5
for
GAI2

.
mtr-u.5
for
25489240

.
mtr-u.5
for
120577405

.
ppo-u.5
for
7475521

.
ppo-u.5
for
7482891

.
ppo-u.5
for
7493546

.
ath-u.5
for
RGL1

.
ath-u.5
for
RGA1

.
ath-u.5
for
RGL2

.
vvi-u.5
for
100253268

.
vvi-u.5
for
100232937

.
sly-u.5
for
GAI

.
osa-u.5
for
4333860

.
zma-u.5
for
100191728

.
zma-u.5
for
100127531

.


Ortholog ID: 2783
Species ath ath gma gma sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit cit bdi nta nta
Symbol RGL2 RGA1 GAI1 GAI2 GAI LOC4333860 LOC100127531 LOC100191728 LOC103852324 LOC103855161 LOC100253268 LOC100232937 LOC7482891 LOC7475521 LOC25489240 LOC120577405 LOC123095833 LOC123087136 LOC123447390 LOC107953968 LOC107944529 LOC106387732 LOC106426199 LOC8062929 LOC102587893 LOC102629959 LOC102614400 LOC100844941 LOC142178915 LOC107777199
Function* RGA-like 2 GRAS family transcription factor family protein DELLA protein GAI 1 DELLA protein GAI 2 DELLA protein GAI DELLA protein SLR1-like DELLA protein DWARF8-like DELLA protein DWARF8 DELLA protein RGL1 DELLA protein RGL2 DELLA protein GAI DELLA protein GAI1 DELLA protein GAIP-B DELLA protein GAIP DELLA protein 1-like DELLA protein 2 DELLA protein RHT-1 DELLA protein RHT-1-like DELLA protein SLN1 DELLA protein GAI DELLA protein GAIP-B DELLA protein RGL3-like DELLA protein RGL3 DELLA protein DWARF8 DELLA protein GAI DELLA protein GAI DELLA protein GAIP-B DELLA protein SLN1 DELLA protein GAI-like DELLA protein GAI1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00564 Glycerophospholipid metabolism 3
osa00565 Ether lipid metabolism 3
osa04144 Endocytosis 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 6
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
bna04016 MAPK signaling pathway - plant 4
bna00904 Diterpenoid biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
bna04016 MAPK signaling pathway - plant 4
bna00330 Arginine and proline metabolism 2
bna00360 Phenylalanine metabolism 2
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821251 814686 547718 547719 543881 4333860 100127531 100191728 103852324 103855161 100253268 100232937 7482891 7475521 25489240 120577405 123095833 123087136 123447390 107953968 107944529 106387732 106426199 8062929 102587893 102629959 102614400 100844941 142178915 107777199
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