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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   CYCA2;1   mitotic cyclin a2-type 
 gma-r.7   CYCA2;1   mitotic cyclin a2-type 
 gma-m.5   CYCA2;1   mitotic cyclin a2-type 
 gma-u.5   100777132   cyclin-A2-2 
 gma-u.5   100807750   cyclin-A2-2 
 gma-u.5   100789757   cyclin-A2-4 
 mtr-u.5   11430005   cyclin-A2-4 
 mtr-u.5   11430006   cyclin-A2-4 
 mtr-u.5   11431336   cyclin-A2-2 
 ppo-u.5   7490979   cyclin-A2-4 
 ath-u.5   CYC3B   mitotic-like cyclin 3B from Arabidopsi 
 ath-u.5   CYCA2;3   CYCLIN A2;3 
 vvi-u.5   100254892   cyclin-A2-3 
 vvi-u.5   100245617   cyclin-A2-2 
 sly-u.5   101261801   cyclin-A2-4 
 sly-u.5   CycA2   cyclin A2 
 osa-u.5   4352280   cyclin-A2-1-like 
 zma-u.5   100280697   cyclin-A2 
 zma-u.5   100285386   cyclin-A2 

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Top 50 coexpressed genes to CYCA2;1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CYCA2;1 (gma-u.5 coexpression data)

CoexMap"547780"


gmaCYCA2;1 | Entrez gene ID : 547780      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 1 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044772 [list] [network] mitotic cell cycle phase transition  (92 genes)  IEA  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (102 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (157 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (100 genes)  IEA  
Protein NP_001237783.1 [sequence] [blastp]
XP_006577871.1 [sequence] [blastp]
XP_040870485.1 [sequence] [blastp]
XP_040870486.1 [sequence] [blastp]
XP_040870487.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 2,  E.R. 2,  plas 1,  pero 1,  golg 1,  golg_plas 1,  E.R._vacu 1  (predict for NP_001237783.1)
E.R. 3,  chlo 2,  nucl 1,  mito 1,  E.R._vacu 1  (predict for XP_006577871.1)
E.R. 3,  chlo 2,  nucl 1,  mito 1,  E.R._vacu 1  (predict for XP_040870485.1)
E.R. 3,  chlo 2,  nucl 1,  mito 1,  E.R._vacu 1  (predict for XP_040870486.1)
nucl 2,  E.R. 2,  plas 1,  pero 1,  golg 1,  golg_plas 1,  E.R._vacu 1  (predict for XP_040870487.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001237783.1)
other 6  (predict for XP_006577871.1)
other 6  (predict for XP_040870485.1)
other 6  (predict for XP_040870486.1)
other 6  (predict for XP_040870487.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
CYCA2;1

.
gma-r.7
for
CYCA2;1

.
gma-m.5
for
CYCA2;1

.
gma-u.5
for
100777132

.
gma-u.5
for
100807750

.
gma-u.5
for
100789757

.
mtr-u.5
for
11430005

.
mtr-u.5
for
11430006

.
mtr-u.5
for
11431336

.
ppo-u.5
for
7490979

.
ath-u.5
for
CYC3B

.
ath-u.5
for
CYCA2;3

.
vvi-u.5
for
100254892

.
vvi-u.5
for
100245617

.
sly-u.5
for
101261801

.
sly-u.5
for
CycA2

.
osa-u.5
for
4352280

.
zma-u.5
for
100280697

.
zma-u.5
for
100285386

.


Ortholog ID: 1246
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit cit bdi nta
Symbol CYC3B CYCA2;4 LOC100793657 LOC100805701 CycA2 LOC101261801 LOC4352280 LOC100280697 LOC100285386 LOC103858695 LOC103842893 LOC100245617 LOC100254892 LOC7490979 LOC11430005 LOC11430006 LOC123080961 LOC123176985 LOC123445663 LOC121230390 LOC107897231 LOC106391323 LOC111197998 LOC8064979 LOC102604868 LOC102630346 LOC102630886 LOC100824825 LOC107761856
Function* mitotic-like cyclin 3B from Arabidopsi Cyclin A2;4 cyclin-A2-4 cyclin-A2-2 cyclin A2 cyclin-A2-4 cyclin-A2-1-like cyclin-A2 cyclin-A2 cyclin-A2-4 cyclin-A2-3 cyclin-A2-2 cyclin-A2-3 cyclin-A2-4 cyclin-A2-4 cyclin-A2-4 cyclin-A2-1 cyclin-A2-1 cyclin-A2-1-like cyclin-A2-2 cyclin-A2-4 cyclin-A2-2 cyclin-A2-4 cyclin-A2-1 cyclin-A2-2-like cyclin-A2-1 cyclin-A2-4 cyclin-A2-1 cyclin-A2-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 2
vvi04517 IgSF CAM signaling 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 5
vvi01200 Carbon metabolism 5
vvi00061 Fatty acid biosynthesis 5
vvi01212 Fatty acid metabolism 5
vvi00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 4
bdi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831001 844377 100793657 100805701 543745 101261801 4352280 100280697 100285386 103858695 103842893 100245617 100254892 7490979 11430005 11430006 123080961 123176985 123445663 121230390 107897231 106391323 111197998 8064979 102604868 102630346 102630886 100824825 107761856
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