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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g013801v5   uncharacterized protein 
 ath-u.5   VTE1   tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) 
 gma-u.5   100809310   tocopherol cyclase, chloroplastic 
 gma-u.5   100791679   tocopherol cyclase, chloroplastic 
 sly-u.5   101263925   probable tocopherol cyclase, chloroplastic 
 osa-u.5   4329007   probable tocopherol cyclase, chloroplastic 
 zma-u.5   541877   sucrose export defective 1 
 vvi-u.5   100268095   tocopherol cyclase, chloroplastic 
 ppo-u.5   18107478   tocopherol cyclase, chloroplastic 
 mtr-u.5   25490120   tocopherol cyclase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_01g013801v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g013801v5 (cre-r.1 coexpression data)

CoexMap"5715077"


creCHLRE_01g013801v5 | Entrez gene ID : 5715077      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (22 genes)
cre01240 [list] [network] Biosynthesis of cofactors (149 genes)
GO BP
GO CC
GO MF
GO:0009976 [list] [network] tocopherol cyclase activity  (2 genes)  IEA  
Protein XP_042928273.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 3,  nucl 1,  cyto 1,  cysk 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_042928273.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_042928273.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g013801v5

.
ath-u.5
for
VTE1

.
gma-u.5
for
100809310

.
gma-u.5
for
100791679

.
sly-u.5
for
101263925

.
osa-u.5
for
4329007

.
zma-u.5
for
541877

.
vvi-u.5
for
100268095

.
ppo-u.5
for
18107478

.
mtr-u.5
for
25490120

.


Ortholog ID: 9620
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sot cit bdi nta nta
Symbol VTE1 LOC100809310 LOC100791679 LOC101263925 LOC4329007 LOC541877 LOC103862197 LOC100268095 LOC18107478 LOC25490120 LOC123052679 LOC123181719 LOC123441129 LOC107900519 LOC107906956 LOC106423394 LOC106411207 CHLRE_01g013801v5 SXD1 LOC102615028 LOC100846924 LOC107798727 LOC107806714
Function* tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic sucrose export defective 1 tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic uncharacterized protein tocopherol cyclase tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic putative tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
gma01240 Biosynthesis of cofactors 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
zma00500 Starch and sucrose metabolism 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 4
tae00260 Glycine, serine and threonine metabolism 3
tae00750 Vitamin B6 metabolism 3
tae01230 Biosynthesis of amino acids 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 5
tae00260 Glycine, serine and threonine metabolism 3
tae00750 Vitamin B6 metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 6
ghi00860 Porphyrin metabolism 4
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 5
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00860 Porphyrin metabolism 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna00100 Steroid biosynthesis 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna00100 Steroid biosynthesis 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
nta00906 Carotenoid biosynthesis 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
nta00906 Carotenoid biosynthesis 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829413 100809310 100791679 101263925 4329007 541877 103862197 100268095 18107478 25490120 123052679 123181719 123441129 107900519 107906956 106423394 106411207 5715077 102577462 102615028 100846924 107798727 107806714
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