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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g023400v5   uncharacterized protein 
 ath-u.5   AT3G08930   LMBR1-like membrane protein 
 ath-u.5   AT5G01460   LMBR1-like membrane protein 
 gma-u.5   100816750   LIMR family protein At5g01460 
 gma-u.5   100800757   LIMR family protein At3g08930 
 gma-u.5   100796998   LIMR family protein At3g08930 
 sly-u.5   101253118   LIMR family protein At5g01460 
 osa-u.5   4339983   LIMR family protein Os06g0128200-like 
 zma-u.5   103638152   LIMR family protein Os06g0128200 
 zma-u.5   100191580   uncharacterized LOC100191580 
 bra-r.6   103870578   LIMR family protein At3g08930 
 bra-r.6   103859320   LIMR family protein At3g08930 
 vvi-u.5   100251150   LIMR family protein At5g01460 
 ppo-u.5   7487473   LIMR family protein At5g01460 
 ppo-u.5   7487319   LIMR family protein At5g01460 
 mtr-u.5   25498742   LIMR family protein At5g01460 
 tae-r.2   123088247   LIMR family protein Os06g0128200 
 tae-r.2   123149452   LIMR family protein Os06g0128200 
 tae-r.2   123164976   LIMR family protein Os06g0128200 
 hvu-r.1   123407157   LIMR family protein Os06g0128200 
 ghi-r.1   107937066   LIMR family protein At5g01460 
 ghi-r.1   107890962   LIMR family protein At5g01460 
 bna-r.1   106352996   LIMR family protein At3g08930-like 
 bna-r.1   111206211   LIMR family protein At3g08930-like 
 bna-r.1   106400515   LIMR family protein At3g08930-like 
 sbi-r.1   110431212   LIMR family protein Os06g0128200 
 sot-r.1   102603267   LIMR family protein At5g01460 
 cit-r.1   102607745   LIMR family protein At5g01460 
 bdi-r.1   100822984   LIMR family protein Os06g0128200 
 nta-r.1   107832552   LIMR family protein At5g01460 
 nta-r.1   107773402   LIMR family protein At5g01460 

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Top 50 coexpressed genes to CHLRE_01g023400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g023400v5 (cre-r.1 coexpression data)

CoexMap"5715242"


creCHLRE_01g023400v5 | Entrez gene ID : 5715242      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 3 1 1 2 2 1 2 1 3 1 2 3 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04977 [list] [network] Vitamin digestion and absorption (3 genes)
cre04980 [list] [network] Cobalamin transport and metabolism (4 genes)
GO BP
GO CC
GO MF
Protein XP_042928429.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 4,  plas 3,  E.R._vacu 3  (predict for XP_042928429.1)
Subcellular
localization
TargetP
other 8,  scret 4  (predict for XP_042928429.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g023400v5
ath-u.5
for
AT3G08930
ath-u.5
for
AT5G01460
gma-u.5
for
100816750
gma-u.5
for
100800757
gma-u.5
for
100796998
sly-u.5
for
101253118
osa-u.5
for
4339983
zma-u.5
for
103638152
zma-u.5
for
100191580
bra-r.6
for
103870578
bra-r.6
for
103859320
vvi-u.5
for
100251150
ppo-u.5
for
7487473
ppo-u.5
for
7487319
mtr-u.5
for
25498742
tae-r.2
for
123088247
tae-r.2
for
123149452
tae-r.2
for
123164976
hvu-r.1
for
123407157
ghi-r.1
for
107937066
ghi-r.1
for
107890962
bna-r.1
for
106352996
bna-r.1
for
111206211
bna-r.1
for
106400515
sbi-r.1
for
110431212
sot-r.1
for
102603267
cit-r.1
for
102607745
bdi-r.1
for
100822984
nta-r.1
for
107832552
nta-r.1
for
107773402


Ortholog ID: 6543
Species cre ath ath gma gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_01g023400v5 AT3G08930 AT5G01460 LOC100816750 LOC100796998 LOC100779980 LOC101253118 LOC4339983 LOC103638152 LOC100191580 LOC103870578 LOC103859320 LOC100251150 LOC7487473 LOC7487319 LOC25498742 LOC123088247 LOC123149452 LOC123164976 LOC123407157 LOC107937066 LOC107890962 LOC111206211 LOC106400515 LOC106439226 LOC110431212 LOC102603267 LOC102607745 LOC100822984 LOC107832552 LOC107773402
Function* uncharacterized protein LMBR1-like membrane protein LMBR1-like membrane protein LIMR family protein At5g01460 LIMR family protein At3g08930 LIMR family protein At5g01460 LIMR family protein At5g01460 LIMR family protein Os06g0128200-like LIMR family protein Os06g0128200 uncharacterized LOC100191580 LIMR family protein At3g08930 LIMR family protein At3g08930 LIMR family protein At5g01460 LIMR family protein At5g01460 LIMR family protein At5g01460 LIMR family protein At5g01460 LIMR family protein Os06g0128200 LIMR family protein Os06g0128200 LIMR family protein Os06g0128200 LIMR family protein Os06g0128200 LIMR family protein At5g01460 LIMR family protein At5g01460 LIMR family protein At3g08930-like LIMR family protein At3g08930-like LIMR family protein At3g08930 LIMR family protein Os06g0128200 LIMR family protein At5g01460 LIMR family protein At5g01460 LIMR family protein Os06g0128200 LIMR family protein At5g01460 LIMR family protein At5g01460
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 4
cre04148 Efferocytosis 3
cre03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 3
osa01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
bra04977 Vitamin digestion and absorption 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04977 Vitamin digestion and absorption 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04382 Cornified envelope formation 2
ppo04144 Endocytosis 2
ppo04142 Lysosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04977 Vitamin digestion and absorption 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04977 Vitamin digestion and absorption 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04977 Vitamin digestion and absorption 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 3
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04130 SNARE interactions in vesicular transport 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 3
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5715242 820042 831815 100816750 100796998 100779980 101253118 4339983 103638152 100191580 103870578 103859320 100251150 7487473 7487319 25498742 123088247 123149452 123164976 123407157 107937066 107890962 111206211 106400515 106439226 110431212 102603267 102607745 100822984 107832552 107773402
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