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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g051100v5   uncharacterized protein 
 ath-u.5   SKIP   chromatin protein family 
 gma-u.5   732608   GAMYB-binding protein 
 gma-u.5   100783576   SNW/SKI-interacting protein A 
 sly-u.5   101256945   SNW/SKI-interacting protein A 
 osa-u.5   4330796   SNW/SKI-interacting protein A-like 
 zma-u.5   100286002   pre-mRNA-splicing factor prp45 
 vvi-u.5   100245841   SNW/SKI-interacting protein A 
 ppo-u.5   112327869   SNW/SKI-interacting protein 
 ppo-u.5   7488937   SNW/SKI-interacting protein 
 mtr-u.5   11415940   SNW/SKI-interacting protein 

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Top 50 coexpressed genes to CHLRE_01g051100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g051100v5 (cre-r.1 coexpression data)

CoexMap"5715751"


creCHLRE_01g051100v5 | Entrez gene ID : 5715751    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (105 genes)  IEA  
GO MF
Protein XP_042928880.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 3,  nucl 2  (predict for XP_042928880.1)
Subcellular
localization
TargetP
mito 4,  chlo 4  (predict for XP_042928880.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g051100v5

.
ath-u.5
for
SKIP

.
gma-u.5
for
732608

.
gma-u.5
for
100783576

.
sly-u.5
for
101256945

.
osa-u.5
for
4330796

.
zma-u.5
for
100286002

.
vvi-u.5
for
100245841

.
ppo-u.5
for
112327869

.
ppo-u.5
for
7488937

.
mtr-u.5
for
11415940

.


Ortholog ID: 8774
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SKIP LOC732608 LOC100783576 LOC101256945 LOC4330796 LOC100286002 LOC103832171 LOC100245841 LOC7488937 LOC112327869 LOC11415940 LOC123145568 LOC123128444 LOC123406214 LOC107899967 LOC107962732 LOC106392163 LOC106354626 CHLRE_01g051100v5 LOC8075185 LOC102602288 LOC102606884 LOC100840735 LOC107812688 LOC107784325
Function* chromatin protein family GAMYB-binding protein SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein A-like pre-mRNA-splicing factor prp45 SNW/SKI-interacting protein SNW/SKI-interacting protein A SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein A-like SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein SNW/SKI-interacting protein uncharacterized protein SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein SNW/SKI-interacting protein A SNW/SKI-interacting protein A SNW/SKI-interacting protein A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03250 Viral life cycle - HIV-1 4
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 5
gma03040 Spliceosome 5
gma03250 Viral life cycle - HIV-1 4
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa03040 Spliceosome 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
tae03440 Homologous recombination 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre00970 Aminoacyl-tRNA biosynthesis 4
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844055 732608 100783576 101256945 4330796 100286002 103832171 100245841 7488937 112327869 11415940 123145568 123128444 123406214 107899967 107962732 106392163 106354626 5715751 8075185 102602288 102606884 100840735 107812688 107784325
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