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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g442000v5   uncharacterized protein 
 ath-u.5   AT4G28200   U3 small nucleolar RNA-associated-like protein 
 gma-u.5   100820428   U3 small nucleolar RNA-associated protein 6 homolog 
 gma-u.5   100817094   U3 small nucleolar RNA-associated protein 6 homolog 
 sly-u.5   101257911   uncharacterized LOC101257911 
 osa-u.5   4328001   uncharacterized LOC4328001 
 zma-u.5   103648282   U3 small nucleolar RNA-associated protein 6 homolog 
 bra-r.6   103834774   U3 small nucleolar RNA-associated protein 6 homolog 
 vvi-u.5   100267580   uncharacterized LOC100267580 
 ppo-u.5   7477962   uncharacterized LOC7477962 
 mtr-u.5   11435791   U3 small nucleolar RNA-associated protein 6 homolog 
 tae-r.2   123188837   U3 small nucleolar RNA-associated protein 6 homolog 
 tae-r.2   123052964   U3 small nucleolar RNA-associated protein 6 homolog 
 tae-r.2   123045127   U3 small nucleolar RNA-associated protein 6 homolog 
 hvu-r.1   123426368   U3 small nucleolar RNA-associated protein 6 homolog 
 ghi-r.1   107958281   U3 small nucleolar RNA-associated protein 6 homolog 
 ghi-r.1   107905915   U3 small nucleolar RNA-associated protein 6 homolog 
 bna-r.1   106361207   U3 small nucleolar RNA-associated protein 6 homolog 
 bna-r.1   106415852   U3 small nucleolar RNA-associated protein 6 homolog 
 sbi-r.1   8054505   U3 small nucleolar RNA-associated protein 6 homolog 
 sot-r.1   102578441   U3 small nucleolar RNA-associated protein 6 homolog 
 cit-r.1   102625015   uncharacterized LOC102625015 
 bdi-r.1   100821848   U3 small nucleolar RNA-associated protein 6 homolog 
 nta-r.1   107823761   uncharacterized LOC107823761 
 nta-r.1   107807360   uncharacterized LOC107807360 

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Top 50 coexpressed genes to CHLRE_10g442000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g442000v5 (cre-r.1 coexpression data)

CoexMap"5715961"


creCHLRE_10g442000v5 | Entrez gene ID : 5715961      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0034388 [list] [network] Pwp2p-containing subcomplex of 90S preribosome  (5 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (19 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001690525.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 1,  plas 1,  vacu 1,  cyto_plas 1,  nucl 1,  cysk_nucl 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1  (predict for XP_001690525.2)
Subcellular
localization
TargetP
other 9  (predict for XP_001690525.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g442000v5
ath-u.5
for
AT4G28200
gma-u.5
for
100820428
gma-u.5
for
100817094
sly-u.5
for
101257911
osa-u.5
for
4328001
zma-u.5
for
103648282
bra-r.6
for
103834774
vvi-u.5
for
100267580
ppo-u.5
for
7477962
mtr-u.5
for
11435791
tae-r.2
for
123188837
tae-r.2
for
123052964
tae-r.2
for
123045127
hvu-r.1
for
123426368
ghi-r.1
for
107958281
ghi-r.1
for
107905915
bna-r.1
for
106361207
bna-r.1
for
106415852
sbi-r.1
for
8054505
sot-r.1
for
102578441
cit-r.1
for
102625015
bdi-r.1
for
100821848
nta-r.1
for
107823761
nta-r.1
for
107807360


Ortholog ID: 10230
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_10g442000v5 AT4G28200 LOC100820428 LOC100817094 LOC101257911 LOC4328001 LOC103648282 LOC103834774 LOC100267580 LOC7477962 LOC11435791 LOC123188837 LOC123052964 LOC123045127 LOC123426368 LOC107958281 LOC107905915 LOC106361207 LOC106415852 LOC8054505 LOC102578441 LOC102625015 LOC100821848 LOC107823761 LOC107807360
Function* uncharacterized protein U3 small nucleolar RNA-associated-like protein U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog uncharacterized LOC101257911 uncharacterized LOC4328001 U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog uncharacterized LOC100267580 uncharacterized LOC7477962 U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog U3 small nucleolar RNA-associated protein 6 homolog uncharacterized LOC102625015 U3 small nucleolar RNA-associated protein 6 homolog uncharacterized LOC107823761 uncharacterized LOC107807360
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae04120 Ubiquitin mediated proteolysis 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 6
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5715961 828935 100820428 100817094 101257911 4328001 103648282 103834774 100267580 7477962 11435791 123188837 123052964 123045127 123426368 107958281 107905915 106361207 106415852 8054505 102578441 102625015 100821848 107823761 107807360
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