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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g503550v5   uncharacterized protein 
 ath-u.5   ISPF   isoprenoid F 
 gma-u.5   100306378   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 
 sly-u.5   ISPF   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
 osa-u.5   4330320   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 
 zma-u.5   100284320   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
 zma-u.5   100276918   methyl erythritol cyclodiphosphate synthase2 
 bra-r.6   103838240   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 vvi-u.5   100250076   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 ppo-u.5   7472744   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 ppo-u.5   7458198   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 mtr-u.5   11443066   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 tae-r.2   123145101   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 tae-r.2   123137618   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 tae-r.2   123128006   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 hvu-r.1   123403987   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 ghi-r.1   107949505   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 ghi-r.1   107952123   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 bna-r.1   106366495   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 
 bna-r.1   106450544   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 
 bna-r.1   106390240   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 
 sbi-r.1   8076034   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 sot-r.1   102582363   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 cit-r.1   102614336   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 bdi-r.1   100821610   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 
 nta-r.1   107774746   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 
 nta-r.1   107829217   2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g503550v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g503550v5 (cre-r.1 coexpression data)

CoexMap"5716430"


creCHLRE_12g503550v5 | Entrez gene ID : 5716430      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 2 1 1 2 1 3 1 2 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00900 [list] [network] Terpenoid backbone biosynthesis (22 genes)
GO BP
GO:0016114 [list] [network] terpenoid biosynthetic process  (20 genes)  IEA  
GO CC
GO MF
GO:0008685 [list] [network] 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity  (1 genes)  IEA  
Protein XP_001690985.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 3  (predict for XP_001690985.1)
Subcellular
localization
TargetP
mito 8,  chlo 4  (predict for XP_001690985.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g503550v5
ath-u.5
for
ISPF
gma-u.5
for
100306378
sly-u.5
for
ISPF
osa-u.5
for
4330320
zma-u.5
for
100284320
zma-u.5
for
100276918
bra-r.6
for
103838240
vvi-u.5
for
100250076
ppo-u.5
for
7472744
ppo-u.5
for
7458198
mtr-u.5
for
11443066
tae-r.2
for
123145101
tae-r.2
for
123137618
tae-r.2
for
123128006
hvu-r.1
for
123403987
ghi-r.1
for
107949505
ghi-r.1
for
107952123
bna-r.1
for
106366495
bna-r.1
for
106450544
bna-r.1
for
106390240
sbi-r.1
for
8076034
sot-r.1
for
102582363
cit-r.1
for
102614336
bdi-r.1
for
100821610
nta-r.1
for
107774746
nta-r.1
for
107829217


Ortholog ID: 8289
Species cre ath gma sly osa zma zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g503550v5 ISPF LOC100306378 ISPF LOC4330320 LOC100284320 LOC100276918 LOC103838240 LOC100250076 LOC7472744 LOC7458198 LOC11443066 LOC123145101 LOC123137618 LOC123128006 LOC123403987 LOC107949505 LOC107952123 LOC106366495 LOC106450544 LOC106392209 LOC8076034 LOC102582363 LOC102614336 LOC100821610 LOC107774746 LOC107829217
Function* uncharacterized protein isoprenoid F 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase methyl erythritol cyclodiphosphate synthase2 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre00900 Terpenoid backbone biosynthesis 2
cre00561 Glycerolipid metabolism 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 6
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 7
zma01230 Biosynthesis of amino acids 3
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 6
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00670 One carbon pool by folate 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 4
mtr00900 Terpenoid backbone biosynthesis 3
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 3
hvu00760 Nicotinate and nicotinamide metabolism 2
hvu01240 Biosynthesis of cofactors 2
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi04626 Plant-pathogen interaction 4
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot00620 Pyruvate metabolism 2
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 6
cit00260 Glycine, serine and threonine metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 3
cit00010 Glycolysis / Gluconeogenesis 2
cit00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi01240 Biosynthesis of cofactors 3
bdi00920 Sulfur metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 5
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716430 842700 100306378 101246365 4330320 100284320 100276918 103838240 100250076 7472744 7458198 11443066 123145101 123137618 123128006 123403987 107949505 107952123 106366495 106450544 106392209 8076034 102582363 102614336 100821610 107774746 107829217
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