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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g701350v5   uncharacterized protein 
 ath-u.5   AT2G25100   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 gma-u.5   100779875   ribonuclease H2 subunit A 
 sly-u.5   101265389   ribonuclease H2 subunit A 
 osa-u.5   4349811   ribonuclease H2 subunit A 
 zma-u.5   103640768   ribonuclease H2 subunit A 
 vvi-u.5   100260143   ribonuclease H2 subunit A 
 ppo-u.5   7486905   ribonuclease H2 subunit A 
 mtr-u.5   25485570   ribonuclease H2 subunit A 

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Top 50 coexpressed genes to CHLRE_17g701350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g701350v5 (cre-r.1 coexpression data)

CoexMap"5717296"


creCHLRE_17g701350v5 | Entrez gene ID : 5717296      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
GO BP
GO:0043137 [list] [network] DNA replication, removal of RNA primer  (2 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (17 genes)  IEA  
GO CC
GO:0032299 [list] [network] ribonuclease H2 complex  (4 genes)  IEA  
GO MF
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (3 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042914377.1 [sequence] [blastp]
XP_042914378.1 [sequence] [blastp]
XP_042914379.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1  (predict for XP_042914377.1)
nucl 3,  cyto 2,  mito 2,  chlo 1,  mito_plas 1,  cyto_plas 1  (predict for XP_042914378.1)
nucl 3,  cyto 2,  mito 2,  chlo 1,  mito_plas 1,  cyto_plas 1  (predict for XP_042914379.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042914377.1)
other 7,  chlo 3  (predict for XP_042914378.1)
other 7,  chlo 3  (predict for XP_042914379.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g701350v5

.
ath-u.5
for
AT2G25100

.
gma-u.5
for
100779875

.
sly-u.5
for
101265389

.
osa-u.5
for
4349811

.
zma-u.5
for
103640768

.
vvi-u.5
for
100260143

.
ppo-u.5
for
7486905

.
mtr-u.5
for
25485570

.


Ortholog ID: 9999
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT2G25100 LOC100779875 LOC101265389 LOC4349811 LOC103640768 LOC103864606 LOC100260143 LOC7486905 LOC25485570 LOC123102987 LOC123124551 LOC123395951 LOC107904365 LOC107904187 LOC106446706 LOC106391202 CHLRE_17g701350v5 LOC8083727 LOC8063792 LOC102581592 LOC102611600 LOC100841783 LOC107771872 LOC107791603
Function* Polynucleotidyl transferase, ribonuclease H-like superfamily protein ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A uncharacterized protein ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A ribonuclease H2 subunit A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 10
ath04145 Phagosome 4
ath03060 Protein export 3
ath04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03010 Ribosome 4
gma03030 DNA replication 4
gma03410 Base excision repair 3
gma03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
sly03420 Nucleotide excision repair 3
sly03410 Base excision repair 3
sly03430 Mismatch repair 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
osa03040 Spliceosome 2
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 9
mtr03430 Mismatch repair 6
mtr03420 Nucleotide excision repair 4
mtr03440 Homologous recombination 3
mtr03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 4
tae04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae04144 Endocytosis 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03010 Ribosome 2
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 16
sbi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot00190 Oxidative phosphorylation 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
cit03030 DNA replication 2
cit03082 ATP-dependent chromatin remodeling 2
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03050 Proteasome 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817048 100779875 101265389 4349811 103640768 103864606 100260143 7486905 25485570 123102987 123124551 123395951 107904365 107904187 106446706 106391202 5717296 8083727 8063792 102581592 102611600 100841783 107771872 107791603
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