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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g218900v5   uncharacterized protein 
 ath-u.5   AT3G24530   AAA-type ATPase family protein / ankyrin repeat family protein 
 gma-u.5   100796476   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 gma-u.5   100788521   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 sly-u.5   101249527   protein CfxQ homolog 
 osa-u.5   4328960   uncharacterized LOC4328960 
 zma-u.5   100193785   AAA-type ATPase family protein / ankyrin repeat family protein 
 vvi-u.5   100254275   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   18100397   protein CfxQ homolog 
 ppo-u.5   7476283   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 mtr-u.5   11440020   protein CfxQ 

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Top 50 coexpressed genes to CHLRE_04g218900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g218900v5 (cre-r.1 coexpression data)

CoexMap"5717843"


creCHLRE_04g218900v5 | Entrez gene ID : 5717843      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0004386 [list] [network] helicase activity  (103 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042925200.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 1,  E.R. 1,  chlo 1,  plas 1,  cysk 1,  E.R._vacu 1,  cysk_plas 1  (predict for XP_042925200.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042925200.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g218900v5

.
ath-u.5
for
AT3G24530

.
gma-u.5
for
100796476

.
gma-u.5
for
100788521

.
sly-u.5
for
101249527

.
osa-u.5
for
4328960

.
zma-u.5
for
100193785

.
vvi-u.5
for
100254275

.
ppo-u.5
for
18100397

.
ppo-u.5
for
7476283

.
mtr-u.5
for
11440020

.


Ortholog ID: 7230
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot sot cit bdi nta nta
Symbol AT3G24530 LOC100788521 LOC100796476 LOC101249527 LOC4328960 LOC100193785 LOC103828625 LOC100254275 LOC7476283 LOC18100397 LOC11440020 LOC123137034 LOC123144489 LOC123401359 LOC107893305 LOC107933010 LOC106410968 LOC106345949 CHLRE_04g218900v5 CHLRE_04g219000v5 LOC8078374 LOC102593816 LOC102600868 LOC102616877 LOC100823785 LOC107813123 LOC107801198
Function* AAA-type ATPase family protein / ankyrin repeat family protein ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic protein CfxQ homolog uncharacterized LOC4328960 AAA-type ATPase family protein / ankyrin repeat family protein protein CbxX, chromosomal ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic protein CfxQ homolog protein CfxQ protein CbxX, chromosomal protein CbxX, chromosomal protein CbxX, chromosomal ESX-3 secretion system protein EccA3 protein CbbX protein CbxX, chromosomal-like protein CbxX, chromosomal uncharacterized protein uncharacterized protein protein CbxX, chromosomal protein cfxQ homolog protein CfxQ-like uncharacterized LOC102616877 ESX-3 secretion system protein EccA3 uncharacterized LOC107813123 uncharacterized LOC107801198
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma04626 Plant-pathogen interaction 3
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma04626 Plant-pathogen interaction 4
gma00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma01230 Biosynthesis of amino acids 2
zma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 3
ppo00053 Ascorbate and aldarate metabolism 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo01230 Biosynthesis of amino acids 2
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00230 Purine metabolism 3
tae04120 Ubiquitin mediated proteolysis 2
tae00030 Pentose phosphate pathway 2
tae00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 5
ghi04626 Plant-pathogen interaction 5
ghi04144 Endocytosis 4
ghi04016 MAPK signaling pathway - plant 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
cit01250 Biosynthesis of nucleotide sugars 3
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01250 Biosynthesis of nucleotide sugars 4
nta00541 Biosynthesis of various nucleotide sugars 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822048 100788521 100796476 101249527 4328960 100193785 103828625 100254275 7476283 18100397 11440020 123137034 123144489 123401359 107893305 107933010 106410968 106345949 5717843 5717739 8078374 102593816 102600868 102616877 100823785 107813123 107801198
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