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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_14g627900v5   uncharacterized protein 
 ath-u.5   AT3G23325   Splicing factor 3B subunit 5/RDS3 complex subunit 10 
 ath-u.5   AT4G14342   Splicing factor 3B subunit 5/RDS3 complex subunit 10 
 gma-u.5   100817663   uncharacterized protein At4g14342 
 gma-u.5   100305893   uncharacterized protein At4g14342 
 sly-u.5   101247946   uncharacterized protein At4g14342 
 sly-u.5   101244858   uncharacterized protein At4g14342-like 
 osa-u.5   4345702   uncharacterized protein At4g14342 
 zma-u.5   103653311   uncharacterized protein At4g14342 
 zma-u.5   100285762   uncharacterized LOC100285762 
 ppo-u.5   7475394   uncharacterized protein At4g14342 
 ppo-u.5   7467542   uncharacterized protein At4g14342 
 mtr-u.5   11416194   uncharacterized protein At4g14342 
 mtr-u.5   11407458   uncharacterized protein At4g14342 

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Top 50 coexpressed genes to CHLRE_14g627900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_14g627900v5 (cre-r.1 coexpression data)

CoexMap"5718277"


creCHLRE_14g627900v5 | Entrez gene ID : 5718277      
Species cre ath gma sly osa zma ppo mtr sbi nta bra vvi cit hvu bdi sot tae bna ghi
Paralog 1 2 2 2 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005686 [list] [network] U2 snRNP  (16 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (26 genes)  IEA  
GO MF
Protein XP_001692799.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  nucl_plas 3,  pero 1,  cyto_E.R. 1  (predict for XP_001692799.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001692799.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_14g627900v5

.
ath-u.5
for
AT3G23325

.
ath-u.5
for
AT4G14342

.
gma-u.5
for
100817663

.
gma-u.5
for
100305893

.
sly-u.5
for
101247946

.
sly-u.5
for
101244858

.
osa-u.5
for
4345702

.
zma-u.5
for
103653311

.
zma-u.5
for
100285762

.
ppo-u.5
for
7475394

.
ppo-u.5
for
7467542

.
mtr-u.5
for
11416194

.
mtr-u.5
for
11407458

.


Ortholog ID: 4559
Species ath ath gma gma sly sly osa zma zma bra bra ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol AT3G23325 AT4G14342 LOC100305893 LOC100817663 LOC101244858 LOC101247946 LOC4345702 LOC100285762 LOC103653311 LOC103828752 LOC103870650 LOC7467542 LOC7475394 LOC11407458 LOC11416194 LOC123182894 LOC123143496 LOC123448972 LOC123447752 LOC107906329 LOC107941154 LOC106357890 LOC106421401 CHLRE_14g627900v5 LOC8077862 LOC8059073 LOC102605884 LOC102596277 LOC102626653 LOC102616163 LOC100841881 LOC107769380 LOC107817263
Function* Splicing factor 3B subunit 5/RDS3 complex subunit 10 Splicing factor 3B subunit 5/RDS3 complex subunit 10 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342-like uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized LOC100285762 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342-like uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342 hypothetical protein uncharacterized protein At4g14342 uncharacterized protein At4g14342 uncharacterized protein At4g14342
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma04120 Ubiquitin mediated proteolysis 4
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03040 Spliceosome 5
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03010 Ribosome 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 3
zma00513 Various types of N-glycan biosynthesis 3
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04145 Phagosome 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00190 Oxidative phosphorylation 2
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 3
ppo04075 Plant hormone signal transduction 3
ppo03040 Spliceosome 2
ppo03020 RNA polymerase 2
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 6
mtr00190 Oxidative phosphorylation 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
tae03040 Spliceosome 4
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
hvu04148 Efferocytosis 2
hvu03050 Proteasome 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi03010 Ribosome 4
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03010 Ribosome 4
ghi03022 Basal transcription factors 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03060 Protein export 3
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 3
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 5
sot03040 Spliceosome 5
sot03083 Polycomb repressive complex 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 5
sot03040 Spliceosome 5
sot04141 Protein processing in endoplasmic reticulum 3
sot03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
bdi03040 Spliceosome 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03050 Proteasome 4
nta03018 RNA degradation 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821913 827077 100305893 100817663 101244858 101247946 4345702 100285762 103653311 103828752 103870650 7467542 7475394 11407458 11416194 123182894 123143496 123448972 123447752 107906329 107941154 106357890 106421401 5718277 8077862 8059073 102605884 102596277 102626653 102616163 100841881 107769380 107817263
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