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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g566900v5   uncharacterized protein 
 ath-u.5   BRCA2(IV)   BREAST CANCER 2 like 2A 
 ath-u.5   BRCA2B   BRCA2-like B 
 gma-u.5   100797849   BRCA2 domain-containing protein 
 sly-u.5   101244820   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like 
 osa-u.5   4324417   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 zma-u.5   103641455   uncharacterized LOC103641455 
 bra-r.6   103868332   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 bra-r.6   103855405   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 vvi-u.5   100241398   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 ppo-u.5   7488719   uncharacterized LOC7488719 
 ppo-u.5   7463421   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 mtr-u.5   11435666   protein BREAST CANCER SUSCEPTIBILITY 2 homolog A 
 tae-r.2   123068835   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 tae-r.2   123077263   uncharacterized LOC123077263 
 tae-r.2   123077330   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 hvu-r.1   123442789   protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like 
 hvu-r.1   123442849   protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like 
 ghi-r.1   107948956   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 ghi-r.1   107899592   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 bna-r.1   106433819   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 bna-r.1   106427200   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 bna-r.1   106398396   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like 
 sot-r.1   102591010   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like 
 bdi-r.1   100832537   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 
 nta-r.1   142171480   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like 
 nta-r.1   142171394   protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like 
 nta-r.1   107807912   protein BREAST CANCER SUSCEPTIBILITY 2 homolog B 

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Top 50 coexpressed genes to CHLRE_13g566900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g566900v5 (cre-r.1 coexpression data)

CoexMap"5719065"


creCHLRE_13g566900v5 | Entrez gene ID : 5719065    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sot bdi nta cit sbi
Paralog 1 2 1 1 1 1 2 1 2 1 3 2 2 3 1 1 3 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO MF
Protein XP_042917270.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 3,  E.R._plas 2,  extr 1,  vacu 1,  nucl 1,  cysk_nucl 1,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1  (predict for XP_042917270.1)
Subcellular
localization
TargetP
other 4  (predict for XP_042917270.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g566900v5
ath-u.5
for
BRCA2(IV)
ath-u.5
for
BRCA2B
gma-u.5
for
100797849
sly-u.5
for
101244820
osa-u.5
for
4324417
zma-u.5
for
103641455
bra-r.6
for
103868332
bra-r.6
for
103855405
vvi-u.5
for
100241398
ppo-u.5
for
7488719
ppo-u.5
for
7463421
mtr-u.5
for
11435666
tae-r.2
for
123068835
tae-r.2
for
123077263
tae-r.2
for
123077330
hvu-r.1
for
123442789
hvu-r.1
for
123442849
ghi-r.1
for
107948956
ghi-r.1
for
107899592
bna-r.1
for
106433819
bna-r.1
for
106427200
bna-r.1
for
106398396
sot-r.1
for
102591010
bdi-r.1
for
100832537
nta-r.1
for
142171480
nta-r.1
for
142171394
nta-r.1
for
107807912


Ortholog ID: 5551
Species cre ath ath gma sly osa zma bra bra vvi ppo ppo mtr tae tae tae hvu hvu ghi ghi bna bna bna sot bdi nta nta nta
Symbol CHLRE_13g566900v5 BRCA2(IV) BRCA2B LOC100797849 LOC101244820 LOC4324417 LOC103641455 LOC103868332 LOC103855405 LOC100241398 LOC7488719 LOC7463421 LOC11435666 LOC123060317 LOC123060247 LOC123068755 LOC123442789 LOC123442849 LOC107948956 LOC107899592 LOC106433819 LOC106427200 LOC106391934 LOC102591010 LOC100832537 LOC142171480 LOC142171394 LOC142180382
Function* uncharacterized protein BREAST CANCER 2 like 2A BRCA2-like B BRCA2 domain-containing protein protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like protein BREAST CANCER SUSCEPTIBILITY 2 homolog B uncharacterized LOC103641455 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B uncharacterized LOC7488719 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog A protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog A uncharacterized LOC123068755 protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like protein BREAST CANCER SUSCEPTIBILITY 2 homolog B protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03460 Fanconi anemia pathway 3
ath03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03460 Fanconi anemia pathway 4
ath03440 Homologous recombination 3
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 6
sly03430 Mismatch repair 3
sly03440 Homologous recombination 3
sly03013 Nucleocytoplasmic transport 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 3
osa04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03440 Homologous recombination 4
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 3
bra04814 Motor proteins 2
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 4
vvi03440 Homologous recombination 3
vvi03410 Base excision repair 2
vvi03420 Nucleotide excision repair 2
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 3
ppo03030 DNA replication 3
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 5
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 3
ppo03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 7
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 6
tae03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03018 RNA degradation 2
hvu03013 Nucleocytoplasmic transport 2
hvu03010 Ribosome 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 6
ghi03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 6
ghi03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 5
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna03030 DNA replication 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 5
bna03440 Homologous recombination 4
bna00270 Cysteine and methionine metabolism 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 4
sot03030 DNA replication 4
sot03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 7
bdi03440 Homologous recombination 4
bdi03460 Fanconi anemia pathway 3
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 5
nta03460 Fanconi anemia pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 6
nta03460 Fanconi anemia pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719065 828230 831710 100797849 101244820 4324417 103641455 103868332 103855405 100241398 7488719 7463421 11435666 123060317 123060247 123068755 123442789 123442849 107948956 107899592 106433819 106427200 106391934 102591010 100832537 142171480 142171394 142180382
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