ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_13g579901v5	uncharacterized protein
ath-u.5	DEG9	DegP protease 9
gma-u.5	100791040	protease Do-like 9
gma-u.5	100800900	protease Do-like 9
gma-u.5	100817187	protease Do-like 9
sly-u.5	101257445	protease Do-like 9
sly-u.5	101268457	protease Do-like 9
osa-u.5	4340589	protease Do-like 9
osa-u.5	4330694	protease Do-like 9
zma-u.5	100217136	uncharacterized LOC100217136
zma-u.5	103655753	protease Do-like 9
zma-u.5	100381831	Protease Do-like 9
bra-r.6	103863959	protease Do-like 9
bra-r.6	103864225	protease Do-like 9
vvi-u.5	100267985	protease Do-like 9
vvi-u.5	100253563	protease Do-like 9
ppo-u.5	7453757	protease Do-like 9
ppo-u.5	7458024	protease Do-like 9
mtr-u.5	11439130	protease Do-like 9
tae-r.2	123138252	protease Do-like 9
tae-r.2	123128392	protease Do-like 9
tae-r.2	123145511	protease Do-like 9
hvu-r.1	123413538	protease Do-like 9
hvu-r.1	123401764	protease Do-like 9
ghi-r.1	107911785	protease Do-like 9
ghi-r.1	107926681	protease Do-like 9
ghi-r.1	107953550	protease Do-like 9
bna-r.1	106390949	protease Do-like 9
bna-r.1	106368956	protease Do-like 9
bna-r.1	106450554	protease Do-like 9
sbi-r.1	8075722	protease Do-like 9
sbi-r.1	110431220	protease Do-like 9
sot-r.1	102582796	protease Do-like 9
sot-r.1	102605719	protease Do-like 9
cit-r.1	102608977	protease Do-like 9
cit-r.1	102608714	protease Do-like 9
bdi-r.1	100831092	protease Do-like 9
bdi-r.1	100829274	protease Do-like 9
bdi-r.1	100824508	protease Do-like 9
nta-r.1	107760827	protease Do-like 9
nta-r.1	107828479	protease Do-like 9
nta-r.1	107806035	protease Do-like 9

Top 50 coexpressed genes to CHLRE_13g579901v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_13g579901v5 (cre-r.1 coexpression data)

CoexMap"5719304"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006508 [list] [network] proteolysis

(404 genes)

IEA

GO CC

GO MF

GO:0004252 [list] [network] serine-type endopeptidase activity	(85 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042917516.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cyto_nucl 3, plas 1, nucl 1, golg_plas 1, E.R._plas 1, mito_plas 1

(predict for XP_042917516.1)

Subcellular
localization
TargetP

other 5

(predict for XP_042917516.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_13g579901v5	ath-u.5 for DEG9	gma-u.5 for 100791040	gma-u.5 for 100800900	gma-u.5 for 100817187	sly-u.5 for 101257445	sly-u.5 for 101268457	osa-u.5 for 4340589	osa-u.5 for 4330694	zma-u.5 for 100217136	zma-u.5 for 103655753	zma-u.5 for 100381831	bra-r.6 for 103863959	bra-r.6 for 103864225	vvi-u.5 for 100267985	vvi-u.5 for 100253563	ppo-u.5 for 7453757	ppo-u.5 for 7458024	mtr-u.5 for 11439130	tae-r.2 for 123138252	tae-r.2 for 123128392	tae-r.2 for 123145511	hvu-r.1 for 123413538	hvu-r.1 for 123401764	ghi-r.1 for 107911785	ghi-r.1 for 107926681	ghi-r.1 for 107953550	bna-r.1 for 106390949	bna-r.1 for 106368956	bna-r.1 for 106450554	sbi-r.1 for 8075722	sbi-r.1 for 110431220	sot-r.1 for 102582796	sot-r.1 for 102605719	cit-r.1 for 102608977	cit-r.1 for 102608714	bdi-r.1 for 100831092	bdi-r.1 for 100829274	bdi-r.1 for 100824508	nta-r.1 for 107760827	nta-r.1 for 107828479	nta-r.1 for 107806035

Ortholog

Ortholog ID: 3505

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

DEG9

Function^*

uncharacterized protein

DegP protease 9

protease Do-like 9

uncharacterized LOC100217136

protease Do-like 9

Protease Do-like 9

protease Do-like 9

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	5
cre03040	Spliceosome	3
cre04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	4
sly03015	mRNA surveillance pathway	3
sly03030	DNA replication	2
sly03410	Base excision repair	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03010	Ribosome	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	3
zma03013	Nucleocytoplasmic transport	2
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03082	ATP-dependent chromatin remodeling	2
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	4
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03018	RNA degradation	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3
sbi03040	Spliceosome	2
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01230	Biosynthesis of amino acids	3
cit03010	Ribosome	3
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta00010	Glycolysis / Gluconeogenesis	2
nta00620	Pyruvate metabolism	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

5719304

834018

100791040

100800900

100817187

101257445

101268457

4340589

4330694

100217136

103655753

100381831

103863959

103864225

100267985

100253563

7453757

7458024

11439130

123128392

123145511

123164984

123413538

123401764

107911785

107926681

107953550

106390949

106450554

106446132

8075722

110431220

102582796

102605719

102608977

102608714

100831092

100829274

100824508

107806035

107779497

107763874

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	3	2	2	3	2	2	2	1	3	2	3	3	2	2	2	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_13g579901v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_13g579901v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**