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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g548000v5   uncharacterized protein 
 ath-u.5   AT3G06530   ARM repeat superfamily protein 
 gma-u.5   100798087   uncharacterized protein At3g06530 
 gma-u.5   100796965   uncharacterized protein At3g06530 
 sly-u.5   101267297   uncharacterized protein At3g06530 
 osa-u.5   4336577   uncharacterized protein At3g06530 
 zma-u.5   100193917   uncharacterized LOC100193917 
 vvi-u.5   100256070   uncharacterized protein At3g06530 
 ppo-u.5   18097079   uncharacterized protein At3g06530 
 mtr-u.5   11431978   uncharacterized protein At3g06530 

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Top 50 coexpressed genes to CHLRE_12g548000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g548000v5 (cre-r.1 coexpression data)

CoexMap"5719616"


creCHLRE_12g548000v5 | Entrez gene ID : 5719616    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0045943 [list] [network] positive regulation of transcription by RNA polymerase I  (5 genes)  IEA  
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0034455 [list] [network] t-UTP complex  (2 genes)  IEA  
GO:0030686 [list] [network] 90S preribosome  (30 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (19 genes)  IEA  
Protein XP_042919062.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 8,  chlo 1,  E.R. 1,  pero 1  (predict for XP_042919062.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_042919062.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g548000v5

.
ath-u.5
for
AT3G06530

.
gma-u.5
for
100798087

.
gma-u.5
for
100796965

.
sly-u.5
for
101267297

.
osa-u.5
for
4336577

.
zma-u.5
for
100193917

.
vvi-u.5
for
100256070

.
ppo-u.5
for
18097079

.
mtr-u.5
for
11431978

.


Ortholog ID: 8444
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G06530 LOC100796965 LOC100798087 LOC101267297 LOC4336577 LOC100193917 LOC103870740 LOC103859164 LOC100256070 LOC18097079 LOC11431978 LOC123046413 LOC123190147 LOC123427577 LOC107953622 LOC107913189 LOC106452995 LOC106431764 CHLRE_12g548000v5 LOC8075108 LOC102587093 LOC102629141 LOC100833028 LOC107793828 LOC107795963
Function* ARM repeat superfamily protein uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized LOC100193917 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530-like uncharacterized protein At3g06530 uncharacterized protein uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03013 Nucleocytoplasmic transport 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03020 RNA polymerase 2
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 2
tae03018 RNA degradation 2
tae03030 DNA replication 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta03020 RNA polymerase 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819831 100796965 100798087 101267297 4336577 100193917 103870740 103859164 100256070 18097079 11431978 123046413 123190147 123427577 107953622 107913189 106452995 106431764 5719616 8075108 102587093 102629141 100833028 107793828 107795963
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