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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g548250v5   uncharacterized protein 
 ath-u.5   AT5G47790   SMAD/FHA domain-containing protein 
 gma-u.5   100804993   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 gma-u.5   100783216   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 sly-u.5   101254681   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 osa-u.5   4345277   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 zma-u.5   100279282   uncharacterized LOC100279282 
 zma-u.5   103626067   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 vvi-u.5   100243354   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 ppo-u.5   18106011   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 ppo-u.5   7463636   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 
 mtr-u.5   11406449   protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 

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Top 50 coexpressed genes to CHLRE_12g548250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g548250v5 (cre-r.1 coexpression data)

CoexMap"5719623"


creCHLRE_12g548250v5 | Entrez gene ID : 5719623    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042919055.1 [sequence] [blastp]
XP_042919056.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  cyto 2  (predict for XP_042919055.1)
nucl 5,  chlo 3,  cyto 2  (predict for XP_042919056.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042919055.1)
other 8  (predict for XP_042919056.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g548250v5

.
ath-u.5
for
AT5G47790

.
gma-u.5
for
100804993

.
gma-u.5
for
100783216

.
sly-u.5
for
101254681

.
osa-u.5
for
4345277

.
zma-u.5
for
100279282

.
zma-u.5
for
103626067

.
vvi-u.5
for
100243354

.
ppo-u.5
for
18106011

.
ppo-u.5
for
7463636

.
mtr-u.5
for
11406449

.


Ortholog ID: 9149
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G47790 LOC100783216 LOC100804993 LOC101254681 LOC4345277 LOC103626067 LOC100279282 LOC103827618 LOC100243354 LOC18106011 LOC7463636 LOC11406449 LOC123185691 LOC123179870 LOC123428386 LOC107960138 LOC107963738 LOC106410348 LOC106402191 CHLRE_12g548250v5 LOC8062987 LOC102595121 LOC102621149 LOC100831964 LOC107822132 LOC107814041
Function* SMAD/FHA domain-containing protein protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog uncharacterized LOC100279282 protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog uncharacterized protein uncharacterized LOC8062987 nuclear inhibitor of protein phosphatase 1 hypothetical protein protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03013 Nucleocytoplasmic transport 3
bra03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03010 Ribosome 3
mtr03420 Nucleotide excision repair 2
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834830 100783216 100804993 101254681 4345277 103626067 100279282 103827618 100243354 18106011 7463636 11406449 123185691 123179870 123428386 107960138 107963738 106410348 106402191 5719623 8062987 102595121 102621149 100831964 107822132 107814041
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