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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g282200v5   uncharacterized protein 
 ath-u.5   SNF7.2   SNF7 family protein 
 ath-u.5   SNF7.1   SNF7 family protein 
 gma-u.5   100789724   vacuolar protein sorting-associated protein 32 homolog 2 
 gma-u.5   100792607   vacuolar protein sorting-associated protein 32 homolog 2 
 gma-u.5   100810464   vacuolar protein sorting-associated protein 32 homolog 2 
 sly-u.5   101264627   vacuolar protein sorting-associated protein 32 homolog 2 
 sly-u.5   101268300   vacuolar protein sorting-associated protein 32 homolog 2 
 sly-u.5   101248169   vacuolar protein sorting-associated protein 32 homolog 2-like 
 osa-u.5   4346566   vacuolar protein sorting-associated protein 32 homolog 2 
 osa-u.5   4351360   vacuolar protein sorting-associated protein 32 homolog 2 
 osa-u.5   4341494   vacuolar protein sorting-associated protein 32 homolog 2 
 zma-u.5   100281033   charged multivesicular body protein 4b 
 zma-u.5   100286131   uncharacterized LOC100286131 
 zma-u.5   100191358   uncharacterized LOC100191358 
 vvi-u.5   100242218   vacuolar protein sorting-associated protein 32 homolog 2 
 vvi-u.5   100258281   vacuolar protein sorting-associated protein 32 homolog 2-like 
 vvi-u.5   100242412   vacuolar protein sorting-associated protein 32 homolog 2-like 
 ppo-u.5   18107661   vacuolar protein sorting-associated protein 32 homolog 2 
 ppo-u.5   18100390   vacuolar protein sorting-associated protein 32 homolog 2 
 mtr-u.5   25497002   vacuolar protein sorting-associated protein 32 homolog 2 
 mtr-u.5   11409610   vacuolar protein sorting-associated protein 32 homolog 1 
 mtr-u.5   11413678   vacuolar protein sorting-associated protein 32 homolog 2 

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Top 50 coexpressed genes to CHLRE_06g282200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g282200v5 (cre-r.1 coexpression data)

CoexMap"5720943"


creCHLRE_06g282200v5 | Entrez gene ID : 5720943      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03250 [list] [network] Viral life cycle - HIV-1 (14 genes)
cre03272 [list] [network] Virion - Hepatitis viruses (5 genes)
cre04144 [list] [network] Endocytosis (52 genes)
GO BP
GO:0006900 [list] [network] vesicle budding from membrane  (14 genes)  IEA  
GO:0032511 [list] [network] late endosome to vacuole transport via multivesicular body sorting pathway  (16 genes)  IEA  
GO CC
GO:0000815 [list] [network] ESCRT III complex  (6 genes)  IEA  
GO:0005771 [list] [network] multivesicular body  (8 genes)  IEA  
GO:0009898 [list] [network] cytoplasmic side of plasma membrane  (12 genes)  IEA  
GO MF
Protein XP_042923989.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  nucl 1  (predict for XP_042923989.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_042923989.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g282200v5

.
ath-u.5
for
SNF7.2

.
ath-u.5
for
SNF7.1

.
gma-u.5
for
100789724

.
gma-u.5
for
100792607

.
gma-u.5
for
100810464

.
sly-u.5
for
101264627

.
sly-u.5
for
101268300

.
sly-u.5
for
101248169

.
osa-u.5
for
4346566

.
osa-u.5
for
4351360

.
osa-u.5
for
4341494

.
zma-u.5
for
100281033

.
zma-u.5
for
100286131

.
zma-u.5
for
100191358

.
vvi-u.5
for
100242218

.
vvi-u.5
for
100258281

.
vvi-u.5
for
100242412

.
ppo-u.5
for
18107661

.
ppo-u.5
for
18100390

.
mtr-u.5
for
25497002

.
mtr-u.5
for
11409610

.
mtr-u.5
for
11413678

.


Ortholog ID: 1334
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol SNF7.1 SNF7.2 LOC100792607 LOC100780154 LOC101268300 LOC101248169 LOC4351360 LOC4349637 LOC100191358 LOC100191382 LOC103837985 LOC103828275 LOC100242218 LOC100258281 LOC18107661 LOC18100390 LOC25497002 LOC11413678 LOC123120390 LOC123120947 LOC123396685 LOC123407204 LOC107932186 LOC121231936 LOC106447110 CHLRE_06g282200v5 LOC8081210 LOC8065087 LOC102604550 LOC102600063 LOC102610273 LOC100823827 LOC100844659 LOC107821113 LOC107830925
Function* SNF7 family protein SNF7 family protein vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2-like vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 uncharacterized LOC100191358 Vacuolar protein sorting-associated protein 32 homolog 1 vacuolar protein sorting-associated protein 32 homolog 1 vacuolar protein sorting-associated protein 32 homolog 1 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2-like vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2-like vacuolar protein sorting-associated protein 32 homolog 2-like vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 1 uncharacterized protein vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2-like vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 2 vacuolar protein sorting-associated protein 32 homolog 1 vacuolar protein sorting-associated protein 32 homolog 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath04120 Ubiquitin mediated proteolysis 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath04145 Phagosome 4
ath04120 Ubiquitin mediated proteolysis 3
ath04148 Efferocytosis 3
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 8
gma04145 Phagosome 3
gma04148 Efferocytosis 3
gma03250 Viral life cycle - HIV-1 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 7
gma03250 Viral life cycle - HIV-1 3
gma03272 Virion - Hepatitis viruses 3
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 3
sly04144 Endocytosis 3
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
sly03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 4
osa03250 Viral life cycle - HIV-1 2
osa03272 Virion - Hepatitis viruses 2
osa04144 Endocytosis 2
osa00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
osa03272 Virion - Hepatitis viruses 2
osa04144 Endocytosis 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 9
zma04130 SNARE interactions in vesicular transport 5
zma03250 Viral life cycle - HIV-1 3
zma03272 Virion - Hepatitis viruses 3
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 5
zma03250 Viral life cycle - HIV-1 3
zma03272 Virion - Hepatitis viruses 3
zma04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 5
ppo04144 Endocytosis 4
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 5
mtr03272 Virion - Hepatitis viruses 3
mtr04130 SNARE interactions in vesicular transport 2
mtr03250 Viral life cycle - HIV-1 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 6
mtr04145 Phagosome 2
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 5
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 9
ghi03272 Virion - Hepatitis viruses 9
ghi04144 Endocytosis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 9
ghi03272 Virion - Hepatitis viruses 9
ghi04144 Endocytosis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna04016 MAPK signaling pathway - plant 4
bna04075 Plant hormone signal transduction 4
bna04120 Ubiquitin mediated proteolysis 3
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 8
cre03272 Virion - Hepatitis viruses 5
cre03250 Viral life cycle - HIV-1 4
cre04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 5
sot00051 Fructose and mannose metabolism 3
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01240 Biosynthesis of cofactors 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 3
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 4
bdi03250 Viral life cycle - HIV-1 2
bdi03272 Virion - Hepatitis viruses 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 4
nta03272 Virion - Hepatitis viruses 4
nta04144 Endocytosis 4
nta04130 SNARE interactions in vesicular transport 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 8
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta00965 Betalain biosynthesis 2
nta00330 Arginine and proline metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829037 816502 100792607 100780154 101268300 101248169 4351360 4349637 100191358 100191382 103837985 103828275 100242218 100258281 18107661 18100390 25497002 11413678 123120390 123120947 123396685 123407204 107932186 121231936 106447110 5720943 8081210 8065087 102604550 102600063 102610273 100823827 100844659 107821113 107830925
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