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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g408500v5   uncharacterized protein 
 ath-u.5   AT5G62030   diphthamide synthesis DPH2 family protein 
 gma-u.5   100818417   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 gma-u.5   100797181   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 sly-u.5   101256980   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 osa-u.5   4331131   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 zma-u.5   100284663   diphthamide biosynthesis protein 1 
 bra-r.6   103874640   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 vvi-u.5   100252989   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 ppo-u.5   7491070   uncharacterized LOC7491070 
 mtr-u.5   11442353   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 tae-r.2   123146122   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 tae-r.2   123139707   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 tae-r.2   123128959   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 hvu-r.1   123402136   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 ghi-r.1   121203425   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 ghi-r.1   107908609   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 bna-r.1   106402329   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1-like 
 bna-r.1   106427201   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 sbi-r.1   8056439   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 sot-r.1   102581184   diphthamide biosynthesis protein 1 
 bdi-r.1   100829197   2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 
 nta-r.1   107791245   uncharacterized LOC107791245 

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Top 50 coexpressed genes to CHLRE_09g408500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g408500v5 (cre-r.1 coexpression data)

CoexMap"5722242"


creCHLRE_09g408500v5 | Entrez gene ID : 5722242      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot bdi nta cit
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0017183 [list] [network] protein histidyl modification to diphthamide  (5 genes)  IEA  
GO CC
GO MF
GO:0090560 [list] [network] 2-(3-amino-3-carboxypropyl)histidine synthase activity  (2 genes)  IEA  
Protein XP_042921517.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_042921517.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_042921517.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g408500v5
ath-u.5
for
AT5G62030
gma-u.5
for
100818417
gma-u.5
for
100797181
sly-u.5
for
101256980
osa-u.5
for
4331131
zma-u.5
for
100284663
bra-r.6
for
103874640
vvi-u.5
for
100252989
ppo-u.5
for
7491070
mtr-u.5
for
11442353
tae-r.2
for
123146122
tae-r.2
for
123139707
tae-r.2
for
123128959
hvu-r.1
for
123402136
ghi-r.1
for
121203425
ghi-r.1
for
107908609
bna-r.1
for
106402329
bna-r.1
for
106427201
sbi-r.1
for
8056439
sot-r.1
for
102581184
bdi-r.1
for
100829197
nta-r.1
for
107791245


Ortholog ID: 11011
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot bdi nta
Symbol CHLRE_09g408500v5 AT5G62030 LOC100818417 LOC100797181 LOC101256980 LOC4331131 LOC100284663 LOC103874640 LOC100252989 LOC7491070 LOC11442353 LOC123146122 LOC123139707 LOC123128959 LOC123402136 LOC121203425 LOC107908609 LOC106402329 LOC106427201 LOC8056439 LOC102581184 LOC100829197 LOC107791245
Function* uncharacterized protein diphthamide synthesis DPH2 family protein 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 diphthamide biosynthesis protein 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 uncharacterized LOC7491070 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1-like 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 diphthamide biosynthesis protein 1 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 uncharacterized LOC107791245
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 3
gma03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00260 Glycine, serine and threonine metabolism 2
nta00270 Cysteine and methionine metabolism 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722242 836323 100818417 100797181 101256980 4331131 100284663 103874640 100252989 7491070 11442353 123146122 123139707 123128959 123402136 121203425 107908609 106402329 106427201 8056439 102581184 100829197 107791245
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