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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g523000v5   uncharacterized protein 
 ath-u.5   AT2G47850   Zinc finger C-x8-C-x5-C-x3-H type family protein 
 ath-u.5   AT3G06410   Zinc finger C-x8-C-x5-C-x3-H type family protein 
 ath-u.5   AT5G18550   Zinc finger C-x8-C-x5-C-x3-H type family protein 
 gma-u.5   100782445   zinc finger CCCH domain-containing protein 34 
 gma-u.5   100789405   zinc finger CCCH domain-containing protein 34 
 gma-u.5   100805017   zinc finger CCCH domain-containing protein 32 
 sly-u.5   101250699   zinc finger CCCH domain-containing protein 32 
 sly-u.5   101257081   zinc finger CCCH domain-containing protein 34-like 
 sly-u.5   101268508   zinc finger CCCH domain-containing protein 34 
 osa-u.5   4326236   zinc finger CCCH domain-containing protein 6-like 
 osa-u.5   4326230   zinc finger CCCH domain-containing protein 5-like 
 zma-u.5   100281498   uncharacterized LOC100281498 
 zma-u.5   109943983   DEAD-box ATP-dependent RNA helicase 30 
 zma-u.5   100284552   zinc finger CCCH type domain-containing protein ZFN-like 1 
 vvi-u.5   100257896   zinc finger CCCH domain-containing protein 34 
 vvi-u.5   100245975   zinc finger CCCH domain-containing protein 32 
 ppo-u.5   7475963   zinc finger CCCH domain-containing protein 34 
 ppo-u.5   18101847   zinc finger CCCH domain-containing protein 34 
 mtr-u.5   25484766   zinc finger CCCH domain-containing protein 32 
 mtr-u.5   11409008   zinc finger CCCH domain-containing protein 34 
 mtr-u.5   11435312   zinc finger CCCH domain-containing protein 34 

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Top 50 coexpressed genes to CHLRE_12g523000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g523000v5 (cre-r.1 coexpression data)

CoexMap"5722544"


creCHLRE_12g523000v5 | Entrez gene ID : 5722544    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 3 3 3 2 3 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (704 genes)  IEA  
Protein XP_042918500.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  cyto 3,  cyto_mito 3,  mito_plas 3  (predict for XP_042918500.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for XP_042918500.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g523000v5

.
ath-u.5
for
AT2G47850

.
ath-u.5
for
AT3G06410

.
ath-u.5
for
AT5G18550

.
gma-u.5
for
100782445

.
gma-u.5
for
100789405

.
gma-u.5
for
100805017

.
sly-u.5
for
101250699

.
sly-u.5
for
101257081

.
sly-u.5
for
101268508

.
osa-u.5
for
4326236

.
osa-u.5
for
4326230

.
zma-u.5
for
100281498

.
zma-u.5
for
109943983

.
zma-u.5
for
100284552

.
vvi-u.5
for
100257896

.
vvi-u.5
for
100245975

.
ppo-u.5
for
7475963

.
ppo-u.5
for
18101847

.
mtr-u.5
for
25484766

.
mtr-u.5
for
11409008

.
mtr-u.5
for
11435312

.


Ortholog ID: 1103
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol AT3G06410 AT2G47850 LOC100814096 LOC100782445 LOC101268508 LOC101257081 LOC4326230 LOC4326236 LOC100284425 LOC100284552 LOC117129993 LOC100257896 LOC100245975 LOC18101847 LOC7475963 LOC11435312 LOC11409008 LOC123061010 LOC123061017 LOC123443412 LOC123443414 LOC107949317 LOC106394374 LOC111202825 CHLRE_12g523000v5 LOC8074481 LOC8074482 LOC102595615 LOC102578479 LOC102609765 LOC102609806 LOC100827764 LOC107778143 LOC107761274
Function* Zinc finger C-x8-C-x5-C-x3-H type family protein Zinc finger C-x8-C-x5-C-x3-H type family protein zinc finger CCCH domain-containing protein 32 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 34-like zinc finger CCCH domain-containing protein 5-like zinc finger CCCH domain-containing protein 6-like zinc finger CCCH type domain-containing protein ZFN-like 3 zinc finger CCCH type domain-containing protein ZFN-like 1 zinc finger CCCH domain-containing protein 34-like zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 32 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 6 zinc finger CCCH domain-containing protein 5 zinc finger CCCH domain-containing protein 5-like zinc finger CCCH domain-containing protein 6-like zinc finger CCCH domain-containing protein 32 zinc finger CCCH domain-containing protein 32 zinc finger CCCH domain-containing protein 58-like uncharacterized protein zinc finger CCCH domain-containing protein 5 zinc finger CCCH domain-containing protein 6 zinc finger CCCH domain-containing protein 34 zinc finger CCCH domain-containing protein 32-like zinc finger CCCH domain-containing protein 32 zinc finger CCCH domain-containing protein 58 uncharacterized LOC100827764 zinc finger CCCH domain-containing protein 32 zinc finger CCCH domain-containing protein 32-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00230 Purine metabolism 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 4
sly00030 Pentose phosphate pathway 2
sly00051 Fructose and mannose metabolism 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 6
osa04145 Phagosome 5
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 5
zma04142 Lysosome 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 5
tae00010 Glycolysis / Gluconeogenesis 4
tae01230 Biosynthesis of amino acids 4
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00020 Citrate cycle (TCA cycle) 5
hvu01210 2-Oxocarboxylic acid metabolism 3
hvu00010 Glycolysis / Gluconeogenesis 3
hvu00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00902 Monoterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00902 Monoterpenoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819815 819397 100814096 100782445 101268508 101257081 4326230 4326236 100284425 100284552 117129993 100257896 100245975 18101847 7475963 11435312 11409008 123061010 123061017 123443412 123443414 107949317 106394374 111202825 5722544 8074481 8074482 102595615 102578479 102609765 102609806 100827764 107778143 107761274
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